Evidence map›Paper›PMID 25015643›Full record

ArticleCancer discovery2014

A large-scale RNAi-based mouse tumorigenesis screen identifies new lung cancer tumor suppressors that repress FGFR signaling.

Ling Lin, Lynn Chamberlain, Magnolia L Pak, Arvindhan Nagarajan, Romi Gupta, Lihua J Zhu, Casey M Wright, Kwun M Fong, Narendra Wajapeyee, Michael R Green

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Effect of microRNA-663b on migration, invasion and epithelial‑mesenchymal transition of oral squamous cell carcinoma cells.Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2022
    Article
  7. Article
  8. KLF7 promotes pancreatic cancer growth and metastasis by up-regulating ISG expression and maintaining Golgi complex integrity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Review
  10. Article
  11. In vivo RNAi screening identifiesBlood advances · 2018
    Article
  12. [Progress on the Study of Targeting FGFR in Squamous Non-small Cell Lung Cancer].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2018
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ling LinHoward Hughes Medical Institute, Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts.
Lynn ChamberlainHoward Hughes Medical Institute, Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts.
Magnolia L PakHoward Hughes Medical Institute, Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts.
Arvindhan NagarajanDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Romi GuptaDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Lihua J ZhuPrograms in Gene Function and Expression, Molecular Medicine and Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts.
Casey M WrightUniversity of Queensland, School of Medicine, Brisbane, Queensland, Australia. Department of Thoracic Medicine, The Prince Charles Hospital and University of Queensland Thoracic Research Centre, Brisbane, Queensland, Australia.
Kwun M FongDepartment of Thoracic Medicine, The Prince Charles Hospital and University of Queensland Thoracic Research Centre, Brisbane, Queensland, Australia.
Narendra WajapeyeeDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Michael R GreenHoward Hughes Medical Institute, Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts. michael.green@umassmed.edu.
Yale University · US

Funding

SPLICING OF MRNA PRECURSORSR01GM035490 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2021
$4.7M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM035490NIGMS NIH HHS R01GM035490
6 · The paper itself

Abstract

unlabelledTo discover new tumor-suppressor genes (TSG), we developed a functional genomics approach in which immortalized but nontumorigenic cells were stably transduced with large-scale shRNA pools and tested for tumor formation in mice. Identification of shRNAs in resulting tumors revealed candidate TSGs, which were validated experimentally and by analyzing expression in human tumor samples. Using this approach, we identified 24 TSGs that were significantly downregulated in human lung squamous cell carcinomas (hLSCC). Amplification of fibroblast growth factor receptor 1 (FGFR1), which aberrantly increases FGFR signaling, is a common genetic alteration in hLSCCs. Remarkably, we found that 17 of the TSGs encode repressors of FGFR signaling. Knockdown of 14 of these TSGs transformed immortalized human bronchial epithelial cells and, in most cases, rendered them sensitive to FGFR inhibitors. Our results indicate that increased FGFR signaling promotes tumorigenesis in many hLSCCs that lack FGFR1 amplification or activating mutations. SIGNIFICANCE: A functional genomics approach identifies new lung TSGs whose loss aberrantly increases FGFR signaling to promote tumorigenesis. These TSGs are frequently downregulated in hLSCCs, indicating that increased FGFR signaling promotes tumorigenesis in many hLSCCs lacking FGFR1 amplification or activating mutations.

Indexed as

RNA InterferenceSignal TransductionAdaptor Proteins, Signal TransducingAnimalsCarcinoma, Squamous CellCell Line, TumorCell Transformation, NeoplasticDisease Models, AnimalDNA MethylationDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticGene Knockdown TechniquesHeterograftsHumansLung NeoplasmsMiceAdaptor Proteins, Signal TransducingReceptor, Fibroblast Growth Factor, Type 1RNA, Small InterferingSH3BP2 protein, humanTumor Suppressor Proteins

Identifiers

PMID25015643
PMCPMC4184919
OpenAlexW2109413912

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.