Evidence map›Paper›PMID 25014715›Full record

ArticleThe Biochemical journal2014

Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine.

Rémi Zallot, Mohammad Yazdani, Aymeric Goyer, Michael J Ziemak, Jiahn-Chou Guan, Donald R McCarty, Valérie de Crécy-Lagard, Svetlana Gerdes, Timothy J Garrett, Jordi Benach and 3 more

Abstract read
In one paragraph

Article in The Biochemical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. B vitamin supply in plants and humans: the importance of vitamer homeostasis.The Plant journal : for cell and molecular biology · 2022
    Review
  6. Natural Variation in Vitamin BFrontiers in plant science · 2022
    Article
  7. Article
  8. Article
  9. The importance of thiamine (vitamin BThe Journal of biological chemistry · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Rémi Zallot*Microbiology and Cell Science Department, University of Florida, Gainesville, FL 32611, U.S.A.
Mohammad Yazdani†Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV 89557, U.S.A.
Aymeric Goyer‡Department of Botany and Plant Pathology, Oregon State University, Hermiston, OR 97838, U.S.A.
Michael J Ziemak§Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Jiahn-Chou Guan§Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Donald R McCarty§Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Valérie de Crécy-Lagard*Microbiology and Cell Science Department, University of Florida, Gainesville, FL 32611, U.S.A.
Svetlana Gerdes∥Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, U.S.A.
Timothy J Garrett¶College of Medicine, University of Florida, Gainesville, FL 32610, U.S.A.
Jordi Benach**Department of Biological Sciences and Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, U.S.A.
John F Hunt**Department of Biological Sciences and Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, U.S.A.
David K Shintani†Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV 89557, U.S.A.
Andrew D Hanson§Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Argonne National Laboratory · US

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2005 to 2009
$16.8M
Southeast Resource Center for Integrated Metabolomics (SECIM)U24DK097209 · NIDDK · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S, YOST, RICHARD A. · 2013 to 2017
$9.2M
NIDDK NIH HHS U24 DK097209NIDDK NIH HHS U24 DK097209-01A1NIGMS NIH HHS 2U54GM75026NIGMS NIH HHS U54 GM075026NIGMS NIH HHS U54 GM094597
6 · The paper itself

Abstract

The TenA protein family occurs in prokaryotes, plants and fungi; it has two subfamilies, one (TenA_C) having an active-site cysteine, the other (TenA_E) not. TenA_C proteins participate in thiamin salvage by hydrolysing the thiamin breakdown product amino-HMP (4-amino-5-aminomethyl-2-methylpyrimidine) to HMP (4-amino-5-hydroxymethyl-2-methylpyrimidine); the function of TenA_E proteins is unknown. Comparative analysis of prokaryote and plant genomes predicted that (i) TenA_E has a salvage role similar to, but not identical with, that of TenA_C and (ii) that TenA_E and TenA_C also have non-salvage roles since they occur in organisms that cannot make thiamin. Recombinant Arabidopsis and maize TenA_E proteins (At3g16990, GRMZM2G080501) hydrolysed amino-HMP to HMP and, far more actively, hydrolysed the N-formyl derivative of amino-HMP to amino-HMP. Ablating the At3g16990 gene in a line with a null mutation in the HMP biosynthesis gene ThiC prevented its rescue by amino-HMP. Ablating At3g16990 in the wild-type increased sensitivity to paraquat-induced oxidative stress; HMP overcame this increased sensitivity. Furthermore, the expression of TenA_E and ThiC genes in Arabidopsis and maize was inversely correlated. These results indicate that TenA_E proteins mediate amidohydrolase and aminohydrolase steps in the salvage of thiamin breakdown products. As such products can be toxic, TenA_E proteins may also pre-empt toxicity.

Indexed as

ArabidopsisArabidopsis ProteinsHerbicidesHydrolasesIron-Sulfur ProteinsOxidative StressParaquatThiamineZea mays3g16990 protein, ArabidopsisArabidopsis ProteinsHerbicidesHydrolasesIron-Sulfur ProteinsParaquatthiaminase IIThiamineTHIC protein, Arabidopsis

Identifiers

PMID25014715
PMCPMC6943918
OpenAlexW2331246958

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.