ArticlePloS one2014
A high-density SNP Map of sunflower derived from RAD-sequencing facilitating fine-mapping of the rust resistance gene R12.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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42 citing papers in PubMed, 77 citations in OpenAlex.
- Construction of a high-density genetic map based on large-scale marker development in Coix lacryma-jobi L. using specific-locus amplified fragment sequencing (slaf-seq).Scientific reports · 2024Article
- Whole-genome sequencing enables molecular dissection and candidate gene identification of the rust resistance gene RTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Introgression and targeting of the PlTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- A Quantitative Genetic Study of Sclerotinia Head Rot Resistance Introgressed from the Wild PerennialInternational journal of molecular sciences · 2022Article
- Genetic mapping of loci involved in oil tocopherol composition control in Russian sunflower (Helianthus annuus L.) lines.G3 (Bethesda, Md.) · 2022Article
- Inflorescence Transcriptome Sequencing and Development of New EST-SSR Markers in Common Buckwheat (Plants (Basel, Switzerland) · 2022Article
- Characterization and mapping of a downy mildew resistance gene,Molecular breeding : new strategies in plant improvement · 2022Article
- Genomic Insights Into Sclerotinia Basal Stalk Rot Resistance Introgressed From WildFrontiers in plant science · 2022Article
- Genetic mapping of a pollinator preference trait: Nectar volume in sunflower (Frontiers in plant science · 2022Article
- RAD-R scripts: R pipeline for RAD-seq from FASTQ files to linkage maps construction and run R/QTL, operating only at copying and pasting scripts into R console.Breeding science · 2021Article
- Discovery and mapping of two new rust resistance genes, RTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Inheritance and molecular mapping of powdery mildew (3 Biotech · 2020Article
- Genetic Dissection of Phomopsis Stem Canker Resistance in Cultivated Sunflower Using High Density SNP Linkage Map.International journal of molecular sciences · 2020Article
- Unraveling theFrontiers in plant science · 2020Article
- A Unique Cytoplasmic-Nuclear Interaction in Sunflower (Frontiers in plant science · 2020Article
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- Diversification of the downy mildew resistance gene pool by introgression of a new gene, PlTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Linkage Mapping and Genome-Wide Association Studies of theFrontiers in genetics · 2019Article
- Construction of a high-density genetic linkage map and QTL mapping of oleic acid content and three agronomic traits in sunflower (Breeding science · 2018Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A high-resolution genetic map of sunflower was constructed by integrating SNP data from three F2 mapping populations (HA 89/RHA 464, B-line/RHA 464, and CR 29/RHA 468). The consensus map spanned a total length of 1443.84 cM, and consisted of 5,019 SNP markers derived from RAD tag sequencing and 118 publicly available SSR markers distributed in 17 linkage groups, corresponding to the haploid chromosome number of sunflower. The maximum interval between markers in the consensus map is 12.37 cM and the average distance is 0.28 cM between adjacent markers. Despite a few short-distance inversions in marker order, the consensus map showed high levels of collinearity among individual maps with an average Spearman's rank correlation coefficient of 0.972 across the genome. The order of the SSR markers on the consensus map was also in agreement with the order of the individual map and with previously published sunflower maps. Three individual and one consensus maps revealed the uneven distribution of markers across the genome. Additionally, we performed fine mapping and marker validation of the rust resistance gene R12, providing closely linked SNP markers for marker-assisted selection of this gene in sunflower breeding programs. This high resolution consensus map will serve as a valuable tool to the sunflower community for studying marker-trait association of important agronomic traits, marker assisted breeding, map-based gene cloning, and comparative mapping.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.