Evidence map›Paper›PMID 25011556›Full record

ArticleScience (New York, N.Y.)2014

HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection.

Thor A Wagner, Sherry McLaughlin, Kavita Garg, Charles Y K Cheung, Brendan B Larsen, Sheila Styrchak, Hannah C Huang, Paul T Edlefsen, James I Mullins, Lisa M Frenkel

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 514 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
514citing papers in PubMed, 1 pooled it
27.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

514 citing papers in PubMed, 1 synthesis or guideline pooled it, 697 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Manipulation of the cell cycle by HIV-1.Biochemical Society transactions · 2026
    Review
  4. Article
  5. Article
  6. Beyond Oncology: Exploring the Expanding Role of CAR T Cell Therapy in Autoimmune and Infectious Diseases-A Systematic Review.Pathophysiology : the official journal of the International Society for Pathophysiology · 2026
    Review
  7. Molecular therapy. Nucleic acids · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. The HIV reservoir landscape in elite controllers.Current opinion in HIV and AIDS · 2026
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

454 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Thor A WagnerSeattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101, USA. University of Washington, Seattle, WA, USA.
Sherry McLaughlinSeattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101, USA. University of Washington, Seattle, WA, USA.
Kavita GargFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Charles Y K CheungFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Brendan B LarsenUniversity of Washington, Seattle, WA, USA.
Sheila StyrchakSeattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101, USA.
Hannah C HuangSeattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101, USA.
Paul T EdlefsenUniversity of Washington, Seattle, WA, USA. Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
James I MullinsUniversity of Washington, Seattle, WA, USA.
Lisa M FrenkelSeattle Children's Research Institute, 1900 9th Avenue, Seattle, WA 98101, USA. University of Washington, Seattle, WA, USA. lfrenkel@uw.edu.
University of Washington · USFred Hutch Cancer Center · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
Viral Determinants of HIV-1 Transmission in African HeterosexualsP01AI057005 · NIAID · UNIVERSITY OF WASHINGTON · PI COREY, LAWRENCE · 2003 to 2014
$20.5M
Mechanisms of Formation and Persistence of Active HIV ReservoirsR01AI111806 · NIAID · UNIVERSITY OF WASHINGTON · PI MULLINS, JAMES IVAN · 2014 to 2018
$4.3M
Role of proviral loci in HIV latencyR01AI125026 · NIAID · UNIVERSITY OF WASHINGTON · PI MULLINS, JAMES IVAN · 2016 to 2019
$3.4M
HIV-1 evolution in the female genital tract and trafficking to the bloodR01AI091550 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI FRENKEL, LISA M · 2011 to 2015
$1.9M
Persistent HIV-1 Replication in the Respiratory Tract Despite ARTK23AI077357 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI WAGNER, THOR ANDREW · 2008 to 2012
$647k
CIHR 201311CVI-322424-244686NIAID NIH HHS K23 AI077357NIAID NIH HHS K23AI077357NIAID NIH HHS P01 AI057005NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI091550NIAID NIH HHS R01AI091550NIAID NIH HHS R01 AI111806NIAID NIH HHS R01 AI125026
6 · The paper itself

Abstract

Antiretroviral treatment (ART) of HIV infection suppresses viral replication. Yet if ART is stopped, virus reemerges because of the persistence of infected cells. We evaluated the contribution of infected-cell proliferation and sites of proviral integration to HIV persistence. A total of 534 HIV integration sites (IS) and 63 adjacent HIV env sequences were derived from three study participants over 11.3 to 12.7 years of ART. Each participant had identical viral sequences integrated at the same position in multiple cells, demonstrating infected-cell proliferation. Integrations were overrepresented in genes associated with cancer and favored in 12 genes across multiple participants. Over time on ART, a greater proportion of persisting proviruses were in proliferating cells. HIV integration into specific genes may promote proliferation of HIV-infected cells, slowing viral decay during ART.

Indexed as

Genes, NeoplasmVirus IntegrationVirus LatencyAnti-HIV AgentsBase SequenceBasic-Leucine Zipper Transcription FactorsCell ProliferationChromosomes, Human, Pair 6env Gene Products, Human Immunodeficiency VirusGenetic LociHIV-1HIV InfectionsHumansJurkat CellsMolecular Sequence DataPhylogenyAnti-HIV AgentsBACH2 protein, humanBasic-Leucine Zipper Transcription Factorsenv Gene Products, Human Immunodeficiency Virus

Identifiers

PMID25011556
PMCPMC4230336
OpenAlexW2064416623

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.