Evidence map›Paper›PMID 25010333›Full record

ArticlePloS one2014

Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.

Alexander Eletsky, Karolina Michalska, Scott Houliston, Qi Zhang, Michael D Daily, Xiaohui Xu, Hong Cui, Adelinda Yee, Alexander Lemak, Bin Wu and 15 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 2 countries.

Alexander EletskyDepartment of Chemistry, The State University of New York at Buffalo, Buffalo, New York, United States of America; Northeast Structural Genomics Consortium.
Karolina MichalskaStructural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America; Midwest Center for Structural Genomics, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America.
Scott HoulistonPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Qi ZhangDepartment of Chemistry, The State University of New York at Buffalo, Buffalo, New York, United States of America; Northeast Structural Genomics Consortium.
Michael D DailyFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Xiaohui XuPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Midwest Center for Structural Genomics, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America.
Hong CuiPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Midwest Center for Structural Genomics, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America.
Adelinda YeePrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Alexander LemakPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Bin WuPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Maite GarciaPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Meagan C BurnetFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Kristen M MeyerFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Uma K AryalFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Octavio SanchezFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Charles AnsongFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Rong XiaoCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Northeast Structural Genomics Consortium.
Thomas B ActonCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Northeast Structural Genomics Consortium.
Joshua N AdkinsFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Gaetano T MontelioneCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America; Northeast Structural Genomics Consortium.
Andrzej JoachimiakStructural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America; Midwest Center for Structural Genomics, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America.
Cheryl H ArrowsmithPrincess Margaret Cancer Centre and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; Northeast Structural Genomics Consortium.
Alexei SavchenkoDepartment of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada; Midwest Center for Structural Genomics, Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America.
Thomas SzyperskiDepartment of Chemistry, The State University of New York at Buffalo, Buffalo, New York, United States of America; Northeast Structural Genomics Consortium.
John R CortFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Pacific Northwest National Laboratory · USArgonne National Laboratory · USStructural Genomics Consortium · CAUniversity of Toronto · CAPrincess Margaret Cancer Centre · CARutgers, The State University of New Jersey · USUniversity at Buffalo, State University of New York · US

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Midwest Center for Structural GenomicsU54GM094585 · NIGMS · UNIVERSITY OF CHICAGO · PI MINOR, WLADEK · 2010 to 2014
$33.7M
Consortia for High-Throughput-Enabled Structural Biology Partnerships (U01)U01GM094623 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI ADKINS, JOSHUA N. · 2010 to 2014
$5.2M
SURFACE CHEMISTRY OF MYCOBACTERIAR01AI008401 · NIAID · NATIONAL JEWISH HEALTH · PI GOREN, MAYER B. · 1989 to 1989
–
SURFACE CHEMISTRY OF MYCOBACTERIAR22AI008401 · NIAID · NATIONAL JEWISH HEALTH · PI GOREN, MAYER B. · 1985 to 1989
–
NIAID NIH HHS Y01 AI008401NIAID NIH HHS Y1-AI-8401NIGMS NIH HHS GM094585NIGMS NIH HHS GM094597NIGMS NIH HHS GM094623NIGMS NIH HHS U01 GM094623NIGMS NIH HHS U54 GM094585NIGMS NIH HHS U54 GM094597
6 · The paper itself

Abstract

Bacterial species in the Enterobacteriaceae typically contain multiple paralogues of a small domain of unknown function (DUF1471) from a family of conserved proteins also known as YhcN or BhsA/McbA. Proteins containing DUF1471 may have a single or three copies of this domain. Representatives of this family have been demonstrated to play roles in several cellular processes including stress response, biofilm formation, and pathogenesis. We have conducted NMR and X-ray crystallographic studies of four DUF1471 domains from Salmonella representing three different paralogous DUF1471 subfamilies: SrfN, YahO, and SssB/YdgH (two of its three DUF1471 domains: the N-terminal domain I (residues 21-91), and the C-terminal domain III (residues 244-314)). Notably, SrfN has been shown to have a role in intracellular infection by Salmonella Typhimurium. These domains share less than 35% pairwise sequence identity. Structures of all four domains show a mixed α+β fold that is most similar to that of bacterial lipoprotein RcsF. However, all four DUF1471 sequences lack the redox sensitive cysteine residues essential for RcsF activity in a phospho-relay pathway, suggesting that DUF1471 domains perform a different function(s). SrfN forms a dimer in contrast to YahO and SssB domains I and III, which are monomers in solution. A putative binding site for oxyanions such as phosphate and sulfate was identified in SrfN, and an interaction between the SrfN dimer and sulfated polysaccharides was demonstrated, suggesting a direct role for this DUF1471 domain at the host-pathogen interface.

Indexed as

Salmonella typhimuriumAmino Acid SequenceBacterial ProteinsLigandsModels, MolecularMolecular Sequence DataPolysaccharidesProtein MultimerizationProtein Structure, QuaternaryProtein Structure, TertiarySulfatesBacterial ProteinsLigandsPolysaccharidesSulfates

Identifiers

PMID25010333
PMCPMC4092069
OpenAlexW1988395729

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.