Evidence map›Paper›PMID 25009553›Full record

ArticleFrontiers in genetics2014

YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps.

Keith Batesole, Kokulapalan Wimalanathan, Lin Liu, Fan Zhang, Craig S Echt, Chun Liang

Abstract read
In one paragraph

Article in Frontiers in genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Keith BatesoleDepartment of Computer Science and Software Engineering, Miami University Oxford, OH, USA.
Kokulapalan WimalanathanDepartment of Biology, Miami University Oxford, OH, USA.
Lin LiuDepartment of Biology, Miami University Oxford, OH, USA.
Fan ZhangDepartment of Computer Science and Software Engineering, Miami University Oxford, OH, USA.
Craig S EchtSouthern Research Station, Southern Institute of Forest Genetics, USDA Forest Service Saucier, MS, USA.
Chun LiangDepartment of Computer Science and Software Engineering, Miami University Oxford, OH, USA ; Department of Biology, Miami University Oxford, OH, USA.

Funding

In silico Exploration of Alternative Polyadenylation Using Next-Generation SequenR15GM094732 · NIGMS · MIAMI UNIVERSITY OXFORD · PI KARRO, JOHN E., LI, QINGSHUN Q · 2011 to 2011
$284k
NIGMS NIH HHS R15 GM094732
6 · The paper itself

Abstract

Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more map sets. Users' genetic map data and optional gene annotations are uploaded, either publically or privately, as long as they follow our template which is available in several standard file formats. Data is parsed and loaded into MySQL relational database to be displayed and compared against users' genetic maps or other public data available on YouGenMap. With the highly interactive GUIs, all public data on YouGenMap are maps available for visualization, comparison, search, filtration and download. YouGenMap web tool is available on the website (http://conifergdb.miamioh.edu/yougenmap) with the source-code repository at (http://sourceforge.net/projects/yougenmap/?source=directory).

Indexed as

genetic mapgenetic map viewergenetic markergraphic user interfaceYouGenMap

Identifiers

PMID25009553
PMCPMC4067605

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.