Evidence map›Paper›PMID 25009545›Full record

ReviewFrontiers in plant science2014

Evaluating plant immunity using mass spectrometry-based metabolomics workflows.

Adam L Heuberger, Faith M Robison, Sarah Marie A Lyons, Corey D Broeckling, Jessica E Prenni

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Metabolic Aspects of Lentil-Plants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Ginsenosides and Biotic Stress Responses of Ginseng.Plants (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Profiling of Altered Metabolomic States inPlants (Basel, Switzerland) · 2020
    Article
  15. Review
  16. Review
  17. Distinguish metabolic profiles and defense enzymes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Adam L HeubergerProteomics and Metabolomics Facility, Colorado State University Fort Collins, CO, USA ; Department of Soil and Crop Sciences, Colorado State University Fort Collins, CO, USA.
Faith M RobisonProteomics and Metabolomics Facility, Colorado State University Fort Collins, CO, USA ; Department of Soil and Crop Sciences, Colorado State University Fort Collins, CO, USA.
Sarah Marie A LyonsProteomics and Metabolomics Facility, Colorado State University Fort Collins, CO, USA.
Corey D BroecklingProteomics and Metabolomics Facility, Colorado State University Fort Collins, CO, USA ; Department of Horticulture and Landscape Architecture, Colorado State University Fort Collins, CO, USA.
Jessica E PrenniProteomics and Metabolomics Facility, Colorado State University Fort Collins, CO, USA ; Department of Biochemistry and Molecular Biology, Colorado State University Fort Collins, CO, USA.
Colorado State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolic processes in plants are key components of physiological and biochemical disease resistance. Metabolomics, the analysis of a broad range of small molecule compounds in a biological system, has been used to provide a systems-wide overview of plant metabolism associated with defense responses. Plant immunity has been examined using multiple metabolomics workflows that vary in methods of detection, annotation, and interpretation, and the choice of workflow can significantly impact the conclusions inferred from a metabolomics investigation. The broad range of metabolites involved in plant defense often requires multiple chemical detection platforms and implementation of a non-targeted approach. A review of the current literature reveals a wide range of workflows that are currently used in plant metabolomics, and new methods for analyzing and reporting mass spectrometry (MS) data can improve the ability to translate investigative findings among different plant-pathogen systems.

Indexed as

GC-MSLC-MSmetabolomicsplant defenseplant pathogen

Identifiers

PMID25009545
PMCPMC4068199
OpenAlexW1964509466

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.