Evidence map›Paper›PMID 25009291›Full record

ArticleMolecular cancer research : MCR2014

SNF5/INI1 deficiency redefines chromatin remodeling complex composition during tumor development.

Darmood Wei, Dennis Goldfarb, Shujie Song, Courtney Cannon, Feng Yan, Donastas Sakellariou-Thompson, Michael Emanuele, Michael B Major, Bernard E Weissman, Yasumichi Kuwahara

Open access · greenAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

  1. Panitumumab-Based EGFR Blockade in SMARCB1-Deficient Renal Medullary Carcinoma: Preclinical Basis and Prospective Clinical Activity.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  2. Activating NRF2Cancer gene therapy · 2025
    Article
  3. Review
  4. Review
  5. CA-125 as a Biomarker in Renal Medullary Carcinoma: Integrated Molecular Profiling, Functional Characterization, and Prospective Clinical Validation.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. SMARCB1 regulates the hypoxic stress response in sickle cell trait.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Darmood WeiCurriculum in Toxicology, University of North Carolina, Chapel Hill, North Carolina.
Dennis GoldfarbDepartment of Computer Science, University of North Carolina at Chapel Hill, North Carolina.
Shujie SongOncology Center, ZhuJiang Hospital, Southern Medical University, Guangzhou, Guangdong, China. Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.
Courtney CannonLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina. Department of Pharmacology, University of North Carolina, Chapel Hill, North Carolina.
Feng YanLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.
Donastas Sakellariou-ThompsonLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.
Michael EmanueleLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina. Department of Pharmacology, University of North Carolina, Chapel Hill, North Carolina.
Michael B MajorLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina. Department of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina.
Bernard E WeissmanLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina. Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, North Carolina. weissman@med.unc.edu kuwahara@koto.kpu-m.ac.jp.
Yasumichi KuwaharaLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina. Department of Pediatrics, Kyoto Prefectural University of Medicine, Kyoto, Japan. weissman@med.unc.edu kuwahara@koto.kpu-m.ac.jp.
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer Center

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
TOXICOLOGYT32ES007126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ILONA JASPERS, Bernard E. Weissman · 1985 to 2026
$13.0M
Role of hsnf5/BAF47 Loss in Human Cancer DevelopmentR01CA091048 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WEISSMAN, BERNARD E. · 2002 to 2012
$2.3M
Exploitation of Near-Haploid Human Cells for Functional Gene DiscoveryDP2OD007149 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MAJOR, MICHAEL BENJAMIN · 2010 to 2010
$2.2M
NCI NIH HHS P30 CA016086NCI NIH HHS P50 CA058223NCI NIH HHS R01 CA091048NCI NIH HHS R01CA91048NIEHS NIH HHS T32 ES007126NIEHS NIH HHS T32ES007126NIH HHS 1-DP2-OD007149-01NIH HHS DP2 OD007149
6 · The paper itself

Abstract

unlabelledMalignant rhabdoid tumors (MRT), a pediatric cancer that most frequently appears in the kidney and brain, generally lack SNF5 (SMARCB1/INI1), a subunit of the SWI/SNF chromatin-remodeling complex. Recent studies have established that multiple SWI/SNF complexes exist due to the presence or absence of different complex members. Therefore, the effect of SNF5 loss upon SWI/SNF complex formation was investigated in human MRT cells. MRT cells and primary human tumors exhibited reduced levels of many complex proteins. Furthermore, reexpression of SNF5 increased SWI/SNF complex protein levels without concomitant increases in mRNA. Proteomic analysis, using mass spectrometry, of MRT cells before and after SNF5 reexpression indicated the recruitment of different components into the complex along with the expulsion of others. IP-Western blotting confirmed these results and demonstrated similar changes in other MRT cell lines. Finally, reduced expression of SNF5 in normal human fibroblasts led to altered levels of these same complex members. These data establish that SNF5 loss during MRT development alters the repertoire of available SWI/SNF complexes, generally disrupting those associated with cellular differentiation. These findings support a model where SNF5 inactivation blocks the conversion of growth-promoting SWI/SNF complexes to differentiation-inducing ones. Therefore, restoration of these complexes in tumors cells provides an attractive approach for the treatment of MRTs. IMPLICATIONS: SNF5 loss dramatically alters SWI/SNF complex composition and prevents formation of complexes required for cellular differentiation.

Indexed as

Chromatin Assembly and DisassemblyCarcinogenesisCell Line, TumorChromosomal Proteins, Non-HistoneDNA-Binding ProteinsFibroblastsGene Expression Regulation, NeoplasticHumansLeupeptinsProteasome InhibitorsRhabdoid TumorRNA, MessengerSMARCB1 ProteinTranscription FactorsTranscription, Geneticbenzyloxycarbonylleucyl-leucyl-leucine aldehydeChromosomal Proteins, Non-HistoneDNA-Binding ProteinsLeupeptinsProteasome InhibitorsRNA, MessengerSMARCB1 ProteinSMARCB1 protein, humanTranscription Factors

Identifiers

PMID25009291
PMCPMC4233162
OpenAlexW2109113060

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.