Evidence map›Paper›PMID 25009180›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator.

Koji Takeo, Shun Tanimura, Takehiro Shinoda, Satoko Osawa, Ivan Krasmirov Zahariev, Naoki Takegami, Yoshiko Ishizuka-Katsura, Naoko Shinya, Shizuka Takagi-Niidome, Aya Tominaga and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Conformational Dynamics of Transmembrane Domain 3 of Presenilin 1 Is Associated with the Trimming Activity of γ-Secretase.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  10. Article
  11. Article
  12. Review
  13. Both positional and chemical variables controlThe Journal of biological chemistry · 2018
    Article
  14. Review
  15. Article
  16. Activation of γ-Secretase Trimming Activity by Topological Changes of Transmembrane Domain 1 of Presenilin 1.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  17. Structural and Chemical Biology of Presenilin Complexes.Cold Spring Harbor perspectives in medicine · 2017
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Koji TakeoDepartments of Neuropathology and Neuroscience and.
Shun TanimuraSynthetic Natural Products Chemistry, Graduate School of Pharmaceutical Sciences, and.
Takehiro ShinodaRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Satoko OsawaDepartments of Neuropathology and Neuroscience and.
Ivan Krasmirov ZaharievSynthetic Natural Products Chemistry, Graduate School of Pharmaceutical Sciences, and.
Naoki TakegamiDepartments of Neuropathology and Neuroscience andFaculty of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan;Department of Neuropathology, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan;
Yoshiko Ishizuka-KatsuraRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Naoko ShinyaRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Shizuka Takagi-NiidomeDepartments of Neuropathology and Neuroscience and.
Aya TominagaDepartments of Neuropathology and Neuroscience and.
Noboru OhsawaRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Tomomi Kimura-SomeyaRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Mikako ShirouzuRIKEN Systems and Structural Biology Center andDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan;
Satoshi YokoshimaSynthetic Natural Products Chemistry, Graduate School of Pharmaceutical Sciences, and.
Shigeyuki YokoyamaRIKEN Systems and Structural Biology Center andRIKEN Structural Biology Laboratory, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan; and.
Tohru FukuyamaSynthetic Natural Products Chemistry, Graduate School of Pharmaceutical Sciences, and.
Taisuke TomitaDepartments of Neuropathology and Neuroscience andCore Research for Evolutional Science and Technology, Japan Science and Technology Agency, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan taisuke@mol.f.u-tokyo.ac.jp.
Takeshi IwatsuboDepartments of Neuropathology and Neuroscience andFaculty of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan;Core Research for Evolutional Science and Technology, Japan Science and Technology Agency, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Systems Biology Institute · JPJapan Science and Technology Agency · JPRIKEN · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

γ-Secretase is an intramembrane-cleaving protease responsible for the generation of amyloid-β (Aβ) peptides. Recently, a series of compounds called γ-secretase modulators (GSMs) has been shown to decrease the levels of long toxic Aβ species (i.e., Aβ42), with a concomitant elevation of the production of shorter Aβ species. In this study, we show that a phenylimidazole-type GSM allosterically induces conformational changes in the catalytic site of γ-secretase to augment the proteolytic activity. Analyses using the photoaffinity labeling technique and systematic mutational studies revealed that the phenylimidazole-type GSM targets a previously unidentified extracellular binding pocket within the N-terminal fragment of presenilin (PS). Collectively, we provide a model for the mechanism of action of the phenylimidazole-type GSM in which binding at the luminal side of PS induces a conformational change in the catalytic center of γ-secretase to modulate Aβ production.

Indexed as

Allosteric RegulationAmino AcidsAmyloid Precursor Protein SecretasesCatalytic DomainEnzyme ActivationFluorescenceHumansImidazolesModels, MolecularMutationPeptidesStructural Homology, ProteinSubstrate SpecificityAmino AcidsAmyloid Precursor Protein SecretasesImidazolesPeptidesallosteric modulatorAlzheimer’s diseaseamyloid-β proteinchemical biologyintramembrane proteolysis

Identifiers

PMID25009180
PMCPMC4115564
OpenAlexW2107824265

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.