Evidence map›Paper›PMID 25009146›Full record

ArticleGenetics2014

Unraveling genomic complexity at a quantitative disease resistance locus in maize.

Tiffany M Jamann, Jesse A Poland, Judith M Kolkman, Laurie G Smith, Rebecca J Nelson

Abstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification and fine-mapping ofMolecular breeding : new strategies in plant improvement · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Inhibition of ethylene involved in resistance toFrontiers in plant science · 2023
    Article
  10. Article
  11. High-resolution mapping reveals aFrontiers in plant science · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tiffany M JamannSchool of Integrative Plant Science, Cornell University, Ithaca, New York 14853.
Jesse A PolandU.S. Department of Agriculture-Agricultural Research Service, Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas 66502 Department of Agronomy, Kansas State University, Manhattan, Kansas 66506.
Judith M KolkmanSchool of Integrative Plant Science, Cornell University, Ithaca, New York 14853.
Laurie G SmithSection of Cell and Developmental Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, California 92093.
Rebecca J NelsonSchool of Integrative Plant Science, Cornell University, Ithaca, New York 14853 rjn7@cornell.edu.ORCID http://orcid.org/0000-0002-9026-7803

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple disease resistance has important implications for plant fitness, given the selection pressure that many pathogens exert directly on natural plant populations and indirectly via crop improvement programs. Evidence of a locus conditioning resistance to multiple pathogens was found in bin 1.06 of the maize genome with the allele from inbred line "Tx303" conditioning quantitative resistance to northern leaf blight (NLB) and qualitative resistance to Stewart's wilt. To dissect the genetic basis of resistance in this region and to refine candidate gene hypotheses, we mapped resistance to the two diseases. Both resistance phenotypes were localized to overlapping regions, with the Stewart's wilt interval refined to a 95.9-kb segment containing three genes and the NLB interval to a 3.60-Mb segment containing 117 genes. Regions of the introgression showed little to no recombination, suggesting structural differences between the inbred lines Tx303 and "B73," the parents of the fine-mapping population. We examined copy number variation across the region using next-generation sequencing data, and found large variation in read depth in Tx303 across the region relative to the reference genome of B73. In the fine-mapping region, association mapping for NLB implicated candidate genes, including a putative zinc finger and pan1. We tested mutant alleles and found that pan1 is a susceptibility gene for NLB and Stewart's wilt. Our data strongly suggest that structural variation plays an important role in resistance conditioned by this region, and pan1, a gene conditioning susceptibility for NLB, may underlie the QTL.

Indexed as

Genome, PlantQuantitative Trait LociDisease ResistanceDNA Copy Number VariationsPlant ProteinsPolymorphism, Single NucleotideProtein Structure, TertiaryZea maysPlant ProteinsGenetics of Immunitymultiple disease resistancenorthern leaf blightquantitative disease resistanceSetosphaeria turcicaStewart’s wilt

Identifiers

PMID25009146
PMCPMC4174945

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.