Evidence map›Paper›PMID 25008915›Full record

ArticleJournal of virology2014

TRIM13 is a negative regulator of MDA5-mediated type I interferon production.

Kavitha Narayan, Lisa Waggoner, Serena T Pham, Gabriel L Hendricks, Stephen N Waggoner, Joseph Conlon, Jennifer P Wang, Katherine A Fitzgerald, Joonsoo Kang

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Tripartite motif 2b (Journal of virology · 2024
    Article
  11. Article
  12. Review
  13. Deubiquitylating Enzymes in Cancer and Immunity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Kavitha NarayanDepartment of Pathology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Lisa WaggonerDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Serena T PhamDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Gabriel L HendricksDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Stephen N WaggonerDepartment of Pathology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Joseph ConlonDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Jennifer P WangDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Katherine A FitzgeraldDivision of Infectious Diseases and Immunology, Program in Innate Immunity, University of Massachusetts Medical School, Worcester, Massachusetts, USA Kate.Fitzgerald@umassmed.edu Joonsoo.Kang@umassmed.edu.
Joonsoo KangDepartment of Pathology, University of Massachusetts Medical School, Worcester, Massachusetts, USA Kate.Fitzgerald@umassmed.edu Joonsoo.Kang@umassmed.edu.
University of Massachusetts Chan Medical School · US

Funding

Gene Regulation in Innate ImmunityR37AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2015 to 2024
$4.6M
TRAINING IN IMMUNOLOGY (COMPETITIVE RENEWAL OF AI07439)T32AI007349 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STERN, LAWRENCE J. · 1989 to 2024
$4.5M
Evaluation of the role of MDA5 in virus-mediated type I diabetesR01AI092105 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WANG, JENNIFER P · 2011 to 2015
$2.0M
Regulation of Type I Interferon Gene Expression in the Innate Immune ResponseR01AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2006 to 2010
$2.0M
Regulation of T cell development by SOX13R01CA100382 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KANG, JOONSOO · 2005 to 2009
$1.5M
Regulation of Type I Interferon Gene Expression in the Innate Immune ResponseR56AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2012 to 2012
$415k
NCI NIH HHS CA100382NCI NIH HHS R01 CA100382NIAID NIH HHS AI067497NIAID NIH HHS AI092105NIAID NIH HHS R01 AI067497NIAID NIH HHS R01 AI092105NIAID NIH HHS R37 AI067497NIAID NIH HHS R56 AI067497NIAID NIH HHS T32 AI007349
6 · The paper itself

Abstract

unlabelledRetinoic acid-inducible gene I (RIG-I) and melanoma differentiation-associated gene 5 (MDA5) are essential intracellular detectors of viral RNA. They contribute to the type I interferon (IFN) response that is crucial for host defense against viral infections. Given the potent antiviral and proinflammatory activities elicited by the type I IFNs, induction of the type I IFN response is tightly regulated. Members of the tripartite motif (TRIM) family of proteins have recently emerged as key regulators of antiviral immunity. We show that TRIM13, an E3 ubiquitin ligase, is expressed in immune cells and is upregulated in bone marrow-derived macrophages upon stimulation with inducers of type I IFN. TRIM13 interacts with MDA5 and negatively regulates MDA5-mediated type I IFN production in vitro, acting upstream of IFN regulatory factor 3. We generated Trim13(-/-) mice and show that upon lethal challenge with encephalomyocarditis virus (EMCV), which is sensed by MDA5, Trim13(-/-) mice produce increased amounts of type I IFNs and survive longer than wild-type mice. Trim13(-/-) murine embryonic fibroblasts (MEFs) challenged with EMCV or poly(I · C) also show a significant increase in beta IFN (IFN-β) levels, but, in contrast, IFN-β responses to the RIG-I-detected Sendai virus were diminished, suggesting that TRIM13 may play a role in positively regulating RIG-I function. Together, these results demonstrate that TRIM13 regulates the type I IFN response through inhibition of MDA5 activity and that it functions nonredundantly to modulate MDA5 during EMCV infection. IMPORTANCE: The type I interferon (IFN) response is crucial for host defense against viral infections, and proper regulation of this pathway contributes to maintaining immune homeostasis. Retinoic acid-inducible gene I (RIG-I) and melanoma differentiation-associated gene 5 (MDA5) are intracellular detectors of viral RNA that induce the type I IFN response. In this study, we show that expression of the gene tripartite motif 13 (Trim13) is upregulated in response to inducers of type I IFN and that TRIM13 interacts with both MDA5 and RIG-I in vitro. Through the use of multiple in vitro and in vivo model systems, we show that TRIM13 is a negative regulator of MDA5-mediated type I IFN production and may also impact RIG-I-mediated type I IFN production by enhancing RIG-I activity. This places TRIM13 at a key junction within the viral response pathway and identifies it as one of the few known modulators of MDA5 activity.

Indexed as

Down-RegulationAnimalsCardiovirus InfectionsDEAD-box RNA HelicasesDNA-Binding ProteinsEncephalomyocarditis virusFemaleFibroblastsHumansInterferon-alphaInterferon-betaInterferon-Induced Helicase, IFIH1Interferon Regulatory Factor-3MaleMiceMice, Inbred C57BLDEAD-box RNA HelicasesDNA-Binding ProteinsIfih1 protein, mouseInterferon-alphaInterferon-betaInterferon-Induced Helicase, IFIH1Interferon Regulatory Factor-3TRIM13 protein, mouseTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID25008915
PMCPMC4178852
OpenAlexW2034283391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.