Evidence map›Paper›PMID 25008320›Full record

ArticleThe Journal of biological chemistry2014

Structural basis for phosphorylation and lysine acetylation cross-talk in a kinase motif associated with myocardial ischemia and cardioprotection.

Benjamin L Parker, Nicholas E Shepherd, Sophie Trefely, Nolan J Hoffman, Melanie Y White, Kasper Engholm-Keller, Brett D Hambly, Martin R Larsen, David E James, Stuart J Cordwell

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 53 citations in OpenAlex.

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  7. PINE: An Automation Tool to Extract and Visualize Protein-Centric Functional Networks.Journal of the American Society for Mass Spectrometry · 2020
    Article
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  18. Sirtuin1-regulated lysine acetylation of p66Shc governs diabetes-induced vascular oxidative stress and endothelial dysfunction.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Benjamin L ParkerFrom the Discipline of Pathology, School of Medical Sciences, University of Sydney, Sydney 2006, Australia, the Diabetes and Obesity Program, Biological Mass Spectrometry Unit, Garvan Institute of Medical Research, 2010 Australia.
Nicholas E Shepherdthe School of Molecular Bioscience and.
Sophie Trefelythe Diabetes and Obesity Program.
Nolan J Hoffmanthe Diabetes and Obesity Program, Biological Mass Spectrometry Unit, Garvan Institute of Medical Research, 2010 Australia.
Melanie Y Whitethe School of Molecular Bioscience and the Charles Perkins Centre, University of Sydney, Sydney 2006, Australia, and.
Kasper Engholm-Kellerthe Charles Perkins Centre, University of Sydney, Sydney 2006, Australia, and.
Brett D HamblyFrom the Discipline of Pathology, School of Medical Sciences, University of Sydney, Sydney 2006, Australia, the Charles Perkins Centre, University of Sydney, Sydney 2006, Australia, and.
Martin R Larsenthe Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
David E Jamesthe Diabetes and Obesity Program, Biological Mass Spectrometry Unit, Garvan Institute of Medical Research, 2010 Australia, the Charles Perkins Centre, University of Sydney, Sydney 2006, Australia, and.
Stuart J CordwellFrom the Discipline of Pathology, School of Medical Sciences, University of Sydney, Sydney 2006, Australia, the School of Molecular Bioscience and the Charles Perkins Centre, University of Sydney, Sydney 2006, Australia, and stuart.cordwell@sydney.edu.au.
University of Sydney · AUGarvan Institute of Medical Research · AUUniversity of Southern Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myocardial ischemia and cardioprotection by ischemic pre-conditioning induce signal networks aimed at survival or cell death if the ischemic period is prolonged. These pathways are mediated by protein post-translational modifications that are hypothesized to cross-talk with and regulate each other. Phosphopeptides and lysine-acetylated peptides were quantified in isolated rat hearts subjected to ischemia or ischemic pre-conditioning, with and without splitomicin inhibition of lysine deacetylation. We show lysine acetylation (acetyl-Lys)-dependent activation of AMP-activated protein kinase, AKT, and PKA kinases during ischemia. Phosphorylation and acetyl-Lys sites mapped onto tertiary structures were proximal in >50% of proteins investigated, yet they were mutually exclusive in 50 ischemic pre-conditioning- and/or ischemia-associated peptides containing the KXXS basophilic protein kinase consensus motif. Modifications in this motif were modeled in the C terminus of muscle-type creatine kinase. Acetyl-Lys increased proximal dephosphorylation by 10-fold. Structural analysis of modified muscle-type creatine kinase peptide variants by two-dimensional NMR revealed stabilization via a lysine-phosphate salt bridge, which was disrupted by acetyl-Lys resulting in backbone flexibility and increased phosphatase accessibility.

Indexed as

AcetylationAmino Acid MotifsAMP-Activated Protein KinasesAnimalsCardiotonic AgentsIschemic PreconditioningLysineMyocardial IschemiaNaphthalenesPhosphorylationPhosphotransferasesProtein Processing, Post-TranslationalProto-Oncogene Proteins c-aktPyronesRatsSignal TransductionAMP-Activated Protein KinasesCardiotonic AgentsLysineNaphthalenesPhosphotransferasesProto-Oncogene Proteins c-aktPyronessplitomicinCardioprotectionHeartLysine AcetylationMass Spectrometry (MS)Myocardial InfarctionPhosphorylationPost-translational Modification (PTM)ProteomicsSignaling

Identifiers

PMID25008320
PMCPMC4162189
OpenAlexW1999342657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.