Evidence map›Paper›PMID 25008111›Full record

ArticleHuman molecular genetics2014

A human mitochondrial poly(A) polymerase mutation reveals the complexities of post-transcriptional mitochondrial gene expression.

William C Wilson, Hue-Tran Hornig-Do, Francesco Bruni, Jeong Ho Chang, Alexis A Jourdain, Jean-Claude Martinou, Maria Falkenberg, Henrik Spåhr, Nils-Göran Larsson, Richard J Lewis and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. Translation in Mitochondrial Ribosomes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Multi-Omics Approach to Mitochondrial DNA Damage in Human Muscle Fibers.International journal of molecular sciences · 2021
    Article
  15. Review
  16. Human Mitochondrial RNA Processing and Modifications: Overview.International journal of molecular sciences · 2021
    Review
  17. Article
  18. Mechanisms and regulation of protein synthesis in mitochondria.Nature reviews. Molecular cell biology · 2021
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 4 countries.

William C WilsonWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health.
Hue-Tran Hornig-DoWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health.
Francesco BruniWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health.
Jeong Ho ChangDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Alexis A JourdainDepartment of Cell Biology, University of Geneva, 30 Quai Ernest-Ansermet, 1211 Genève 4, Switzerland.
Jean-Claude MartinouDepartment of Cell Biology, University of Geneva, 30 Quai Ernest-Ansermet, 1211 Genève 4, Switzerland.
Maria FalkenbergDepartment of Biochemistry and Cell Biology, University of Göteborg, Box 440, 40530 Göteborg, Sweden.
Henrik SpåhrMax Planck Institute for Biology of Ageing, Gleueler Strasse 50a, D-50931 Cologne, Germany.
Nils-Göran LarssonMax Planck Institute for Biology of Ageing, Gleueler Strasse 50a, D-50931 Cologne, Germany.
Richard J LewisInstitute for Cell and Molecular Biosciences and.
Lorraine HewittInstitute for Cell and Molecular Biosciences and.
Arnaud BasléInstitute for Cell and Molecular Biosciences and.
Harold E CrossDepartment of Ophthalmology, University of Arizona School of Medicine, Tucson, AZ 85711, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Robert R LebelCenter for Behavior, Development, and Genetics, Medical Genetics, SUNY Upstate Medical University, Syracuse, NY 13210, USA and.
Andrew H CrosbyMolecular Genetics, University of Exeter Medical School, Royal Devon and Exeter Hospital, Barrack Road, Exeter EX2 5DW, UK.
Zofia M A Chrzanowska-LightowlersWellcome Trust Centre for Mitochondrial Research, Institute for Cell and Molecular Biosciences, Newcastle University Medical School, Newcastle upon Tyne NE2 4HH, UK, robert.lightowlers@ncl.ac.uk zofia.chrzanowska-lightowlers@ncl.ac.uk.
Robert N LightowlersWellcome Trust Centre for Mitochondrial Research, Institute for Cell and Molecular Biosciences, Newcastle University Medical School, Newcastle upon Tyne NE2 4HH, UK, robert.lightowlers@ncl.ac.uk zofia.chrzanowska-lightowlers@ncl.ac.uk.
Max Planck Institute for Biology of Ageing · DEColumbia University · USUniversity of Geneva · CHMax Planck Society · DERoyal Devon and Exeter Hospital · GBSUNY Upstate Medical University · US

Funding

Structural biology of pre-mRNA 3'-end processingR01GM077175 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2007 to 2015
$2.8M
Medical Research Council G1002279NIGMS NIH HHS R01 GM077175NIGMS NIH HHS R01GM077175Wellcome Trust 096919Wellcome Trust 096919/Z/11/Z
6 · The paper itself

Abstract

The p.N478D missense mutation in human mitochondrial poly(A) polymerase (mtPAP) has previously been implicated in a form of spastic ataxia with optic atrophy. In this study, we have investigated fibroblast cell lines established from family members. The homozygous mutation resulted in the loss of polyadenylation of all mitochondrial transcripts assessed; however, oligoadenylation was retained. Interestingly, this had differential effects on transcript stability that were dependent on the particular species of transcript. These changes were accompanied by a severe loss of oxidative phosphorylation complexes I and IV, and perturbation of de novo mitochondrial protein synthesis. Decreases in transcript polyadenylation and in respiratory chain complexes were effectively rescued by overexpression of wild-type mtPAP. Both mutated and wild-type mtPAP localized to the mitochondrial RNA-processing granules thereby eliminating mislocalization as a cause of defective polyadenylation. In vitro polyadenylation assays revealed severely compromised activity by the mutated protein, which generated only short oligo(A) extensions on RNA substrates, irrespective of RNA secondary structure. The addition of LRPPRC/SLIRP, a mitochondrial RNA-binding complex, enhanced activity of the wild-type mtPAP resulting in increased overall tail length. The LRPPRC/SLIRP effect although present was less marked with mutated mtPAP, independent of RNA secondary structure. We conclude that (i) the polymerase activity of mtPAP can be modulated by the presence of LRPPRC/SLIRP, (ii) N478D mtPAP mutation decreases polymerase activity and (iii) the alteration in poly(A) length is sufficient to cause dysregulation of post-transcriptional expression and the pathogenic lack of respiratory chain complexes.

Indexed as

FibroblastsGene ExpressionHumansMitochondrial ProteinsMutationNeoplasm ProteinsOxidative PhosphorylationPolynucleotide AdenylyltransferasePrimary Cell CultureRNA-Binding ProteinsRNA, MessengerRNA, MitochondrialRNA Processing, Post-TranscriptionalLRPPRC protein, humanmitochondrial messenger RNAMitochondrial ProteinsNeoplasm ProteinsPolynucleotide AdenylyltransferaseRNA-Binding ProteinsRNA, MessengerRNA, MitochondrialSLIRP protein, human

Identifiers

PMID25008111
PMCPMC4222368
OpenAlexW2147357733

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.