Evidence map›Paper›PMID 25007800›Full record

ArticleEMBO molecular medicine2014

Molecular pathogenesis of spondylocheirodysplastic Ehlers-Danlos syndrome caused by mutant ZIP13 proteins.

Bum-Ho Bin, Shintaro Hojyo, Toshiaki Hosaka, Jinhyuk Bhin, Hiroki Kano, Tomohiro Miyai, Mariko Ikeda, Tomomi Kimura-Someya, Mikako Shirouzu, Eun-Gyung Cho and 15 more

Open access · goldAbstract read
In one paragraph

Article in EMBO molecular medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Zinc and Zinc Transporters in Dermatology.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Genetics of common cerebral small vessel disease.Nature reviews. Neurology · 2022
    Review
  17. Review
  18. Article
  19. Article
  20. Zinc Homeostasis in Bone: Zinc Transporters and Bone Diseases.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 12 institutions in 4 countries.

Bum-Ho BinBioscience Research Institute, Amorepacific Corporation R&D Center, Yongin, Republic of Korea Division of Pathology, Department of Oral Diagnostic Sciences, School of Dentistry Showa University, Shinagawa, Japan.
Shintaro HojyoLaboratory for Homeostatic Network, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan Deutsches Rheuma-Forschungszentrum, Berlin, Osteoimmunology, Berlin, Germany.
Toshiaki HosakaRIKEN Systems and Structural Biology Center, Yokohama, Japan Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Yokohama, Japan.
Jinhyuk BhinDepartment of Chemical Engineering, POSTECH, Pohang, Republic of Korea.
Hiroki KanoLaboratory for Bone and Joint Diseases, RIKEN Center for Integrative Medical Sciences, Tokyo, Japan.
Tomohiro MiyaiGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan Laboratory for Immune Regeneration, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Mariko IkedaRIKEN Systems and Structural Biology Center, Yokohama, Japan Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Yokohama, Japan.
Tomomi Kimura-SomeyaRIKEN Systems and Structural Biology Center, Yokohama, Japan Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Yokohama, Japan.
Mikako ShirouzuRIKEN Systems and Structural Biology Center, Yokohama, Japan Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Yokohama, Japan.
Eun-Gyung ChoBioscience Research Institute, Amorepacific Corporation R&D Center, Yongin, Republic of Korea.
Kazuhisa FukueDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.
Taiho KambeDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.
Wakana OhashiLaboratory for Homeostatic Network, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Kyu-Han KimBioscience Research Institute, Amorepacific Corporation R&D Center, Yongin, Republic of Korea.
Juyeon SeoBioscience Research Institute, Amorepacific Corporation R&D Center, Yongin, Republic of Korea.
Dong-Hwa ChoiGyeonggi Bio Center, Gyeonggi Institute of Science & Technology Promotion, Suwon, Republic of Korea.
Yeon-Ju NamGyeonggi Bio Center, Gyeonggi Institute of Science & Technology Promotion, Suwon, Republic of Korea.
Daehee HwangCenter for Systems Biology of Plant Senescence and Life History, Institute for Basic Science, Daegu, Republic of Korea.
Ayako FukunakaCenter for Beta-Cell Biology and Regeneration, Department of Metabolism and Endocrinology, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Yoshio FujitaniCenter for Beta-Cell Biology and Regeneration, Department of Metabolism and Endocrinology, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Shigeyuki YokoyamaRIKEN Systems and Structural Biology Center, Yokohama, Japan RIKEN Structural Biology Laboratory, Yokohama, Japan.
Andrea Superti-FurgaDepartment of Pediatrics, Centre Hospitalier Universitaire Vaudois University of Lausanne, Lausanne, Switzerland.
Shiro IkegawaLaboratory for Bone and Joint Diseases, RIKEN Center for Integrative Medical Sciences, Tokyo, Japan.
Tae Ryong LeeBioscience Research Institute, Amorepacific Corporation R&D Center, Yongin, Republic of Korea trlee@amorepacific.com fukada@rcai.riken.jp.
Toshiyuki FukadaDivision of Pathology, Department of Oral Diagnostic Sciences, School of Dentistry Showa University, Shinagawa, Japan Laboratory for Homeostatic Network, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan trlee@amorepacific.com fukada@rcai.riken.jp.
Systems Biology Institute · JPAmorepacific (South Korea) · KRRIKEN Center for Integrative Medical Sciences · JPGyeonggi College of Science and Technology · KRJuntendo University · JPKyoto University · JPShowa University · JPGerman Rheumatism Research Centre · DEInstitute for Basic Science · KRPohang University of Science and Technology · KRUbe Frontier University · JPUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The zinc transporter protein ZIP13 plays critical roles in bone, tooth, and connective tissue development, and its dysfunction is responsible for the spondylocheirodysplastic form of Ehlers-Danlos syndrome (SCD-EDS, OMIM 612350). Here, we report the molecular pathogenic mechanism of SCD-EDS caused by two different mutant ZIP13 proteins found in human patients: ZIP13(G64D), in which Gly at amino acid position 64 is replaced by Asp, and ZIP13(ΔFLA), which contains a deletion of Phe-Leu-Ala. We demonstrated that both the ZIP13(G64D) and ZIP13(ΔFLA) protein levels are decreased by degradation via the valosin-containing protein (VCP)-linked ubiquitin proteasome pathway. The inhibition of degradation pathways rescued the protein expression levels, resulting in improved intracellular Zn homeostasis. Our findings uncover the pathogenic mechanisms elicited by mutant ZIP13 proteins. Further elucidation of these degradation processes may lead to novel therapeutic targets for SCD-EDS.

Indexed as

Cation Transport ProteinsEhlers-Danlos SyndromeHumansMutant ProteinsMutation, MissenseProteasome Endopeptidase ComplexProteolysisSequence DeletionUbiquitinZincCation Transport ProteinsMutant ProteinsProteasome Endopeptidase ComplexSLC39A13 protein, humanUbiquitinZincProteasomeSCD‐EDSVCPzinc transporterZIP13

Identifiers

PMID25007800
PMCPMC4154131
OpenAlexW2161764351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.