Evidence map›Paper›PMID 25007154›Full record

ArticlePloS one2014

Biodegradation of polycyclic aromatic hydrocarbons by Novosphingobium pentaromativorans US6-1.

Yihua Lyu, Wei Zheng, Tianling Zheng, Yun Tian

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Review
  6. Article
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  8. Article
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  11. Article
  12. Review
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  14. Article
  15. Biodegradation and Removal of PAHs byJournal of microbiology and biotechnology · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Transcriptome Analysis ofInternational journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yihua LyuKey Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Science, Xiamen University, Xiamen, China.
Wei ZhengKey Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China.
Tianling ZhengKey Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China.
Yun TianKey Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China.
Xiamen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novosphingobium pentaromativorans US6-1, a marine bacterium isolated from muddy sediments of Ulsan Bay, Republic of Korea, was previously shown to be capable of degrading multiple polycyclic aromatic hydrocarbons (PAHs). In order to gain insight into the characteristics of PAHs degradation, a proteome analysis of N. pentaromativorans US6-1 exposed to phenanthrene, pyrene, and benzo[a]pyrene was conducted. Several enzymes associated with PAHs degradation were identified, including 4-hydroxybenzoate 3-monooxygenase, salicylaldehyde dehydrogenase, and PAH ring-hydroxylating dioxygenase alpha subunit. Reverse transcription and real-time quantitative PCR was used to compare RHDα and 4-hydroxybenzoate 3-monooxygenase gene expression, and showed that the genes involved in the production of these two enzymes were upregulated to varying degrees after exposing the bacterium to PAHs. These results suggested that N. pentaromativorans US6-1 degraded PAHs via the metabolic route initiated by ring-hydroxylating dioxygenase, and further degradation occurred via the o-phthalate pathway or salicylate pathway. Both pathways subsequently entered the tricarboxylic acid (TCA) cycle, and were mineralized to CO2.

Indexed as

Bacterial ProteinsBenzo(a)pyreneBiodegradation, EnvironmentalEnvironmental PollutantsGene ExpressionMixed Function OxygenasesPhenanthrenesProteomePyrenesRNA, BacterialRNA, Ribosomal, 16SSphingomonadaceaeBacterial ProteinsBenzo(a)pyreneEnvironmental PollutantsMixed Function OxygenasesphenanthrenePhenanthrenesProteomepyrenePyrenesRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID25007154
PMCPMC4090153
OpenAlexW2143871739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.