Evidence map›Paper›PMID 25007141›Full record

ArticleNature communications2014

The Opisthorchis viverrini genome provides insights into life in the bile duct.

Neil D Young, Niranjan Nagarajan, Suling Joyce Lin, Pasi K Korhonen, Aaron R Jex, Ross S Hall, Helena Safavi-Hemami, Worasak Kaewkong, Denis Bertrand, Song Gao and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 182 citations in OpenAlex.

  1. Review
  2. Review
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  7. The genome sequence of the liver flukeWellcome open research · 2025
    Article
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  9. Review
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  11. Article
  12. Article
  13. Review
  14. Review
  15. Trematode Genomics and Proteomics.Advances in experimental medicine and biology · 2024
    Article
  16. Liver Flukes: Clonorchis and Opisthorchis.Advances in experimental medicine and biology · 2024
    Review
  17. Advancing vaccine development againstFrontiers in pharmacology · 2024
    Review
  18. Review
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 6 countries.

Neil D Young1] Faculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia [2].
Niranjan Nagarajan1] Genome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore [2].
Suling Joyce LinGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore.
Pasi K KorhonenFaculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia.
Aaron R JexFaculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia.
Ross S HallFaculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia.
Helena Safavi-HemamiDepartment of Biology, University of Utah, Salt Lake City, Utah 84112, USA.
Worasak KaewkongLiver Fluke and Cholangiocarcinoma Research Center, Department of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.
Denis BertrandGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore.
Song GaoNUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore 138672, Republic of Singapore.
Qihui SeetGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore.
Sopit WongkhamLiver Fluke and Cholangiocarcinoma Research Center, Department of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.
Bin Tean TehCancer and Stem Cell Biology, Duke-NUS Graduate Medical School, Singapore 138672, Republic of Singapore.
Chaisiri WongkhamLiver Fluke and Cholangiocarcinoma Research Center, Department of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.
Pewpan Maleewong IntapanResearch and Diagnostic Center for Emerging Infectious Diseases, Department of Parasitology, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.
Wanchai MaleewongResearch and Diagnostic Center for Emerging Infectious Diseases, Department of Parasitology, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.
Xinhua Yang
Min Hu
Zuo Wang
Andreas Hofmann1] Faculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia [2] Structural Chemistry Program, Eskitis Institute, Griffith University, Brisbane, Queensland 4111, Australia.
Paul W SternbergDivision of Biology, HHMI, California Institute of Technology, Pasadena, California 91125, USA.
Patrick Tan1] Genome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore [2] Cancer and Stem Cell Biology, Duke-NUS Graduate Medical School, Singapore 138672, Republic of Singapore.
Jun Wang1] [2] Department of Biology, University of Copenhagen, Copenhagen 2200, Denmark [3] Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia [4] Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China.
Robin B GasserFaculty of Veterinary Science, The University of Melbourne, Melbourne, Victoria 3010, Australia.
Khon Kaen University · THThe University of Melbourne · AUBGI Group (China) · CNGenome Institute of Singapore · SGDuke-NUS Medical School · SGCalifornia Institute of Technology · USGriffith University · AUNational University of Singapore · SGUniversity of Utah · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Opisthorchiasis is a neglected, tropical disease caused by the carcinogenic Asian liver fluke, Opisthorchis viverrini. This hepatobiliary disease is linked to malignant cancer (cholangiocarcinoma, CCA) and affects millions of people in Asia. No vaccine is available, and only one drug (praziquantel) is used against the parasite. Little is known about O. viverrini biology and the diseases that it causes. Here we characterize the draft genome (634.5 Mb) and transcriptomes of O. viverrini, elucidate how this fluke survives in the hostile environment within the bile duct and show that metabolic pathways in the parasite are highly adapted to a lipid-rich diet from bile and/or cholangiocytes. We also provide additional evidence that O. viverrini and other flukes secrete proteins that directly modulate host cell proliferation. Our molecular resources now underpin profound explorations of opisthorchiasis/CCA and the design of new interventions.

Indexed as

Amino Acid SequenceAnimalsBile Duct NeoplasmsBile Ducts, IntrahepaticCholangiocarcinomaDNA, HelminthGenomeHelminth ProteinsHost-Parasite InteractionsHumansMolecular Sequence DataOpisthorchiasisOpisthorchisDNA, HelminthHelminth Proteins

Identifiers

PMID25007141
PMCPMC4104445
OpenAlexW2166172387

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.