Evidence map›Paper›PMID 25006810›Full record

ArticlePloS one2014

Antisense transcription regulates the expression of the enterohemorrhagic Escherichia coli virulence regulatory gene ler in response to the intracellular iron concentration.

Toru Tobe, Hilo Yen, Hiroki Takahashi, Yoko Kagayama, Naotake Ogasawara, Taku Oshima

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Prokaryotic homeostasis - a solution to thrive and survive.Frontiers in molecular biosciences · 2025
    Review
  2. Review
  3. Fur Protein Regulates the Motility of Avian PathogenicFrontiers in veterinary science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Toru TobeDepartment of Biomedical Informatics, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.
Hilo YenDepartment of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.
Hiroki TakahashiMedical Mycology Research Center, Chiba University, Chiba, Chiba, Japan.
Yoko KagayamaGraduate School of Information Science, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Naotake OgasawaraGraduate School of Information Science, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Taku OshimaGraduate School of Information Science, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Nara Institute of Science and Technology · JPOsaka University · JPChiba University Hospital · JP

Funding

Biotechnology and Biological Sciences Research Council BB/H531586/1
6 · The paper itself

Abstract

Enteric pathogens, such as enterohemorrhagic E. coli (EHEC) O157:H7, encounter varying concentrations of iron during their life cycle. In the gastrointestinal tract, the amount of available free iron is limited because of absorption by host factors. EHEC and other enteric pathogens have developed sophisticated iron-responsive systems to utilize limited iron resources, and these systems are primarily regulated by the Fur repressor protein. The iron concentration could be a signal that controls gene expression in the intestines. In this study, we explored the role of iron in LEE (locus for enterocyte effacement) virulence gene expression in EHEC. In contrast to the expression of Fur-regulated genes, the expression of LEE genes was greatly reduced in fur mutants irrespective of the iron concentration. The expression of the ler gene, the LEE-encoded master regulator, was affected at a post-transcription step by fur mutation. Further analysis showed that the loss of Fur affected the translation of the ler gene by increasing the intracellular concentration of free iron, and the transcription of the antisense strand was necessary for regulation. The results indicate that LEE gene expression is closely linked to the control of intracellular free iron homeostasis.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAnti-Bacterial AgentsBacterial ProteinsDrug Resistance, BacterialEscherichia coli O157Escherichia coli ProteinsFerritinsGene ExpressionIronOligoribonucleotides, AntisensePhosphoproteinsRegulonRepressor ProteinsRNA InterferenceStreptonigrinAnti-Bacterial AgentsBacterial ProteinsEscherichia coli Proteinsferric uptake regulating proteins, bacterialFerritinsIronLEE protein, E coliLer protein, E coliOligoribonucleotides, AntisensePhosphoproteinsRepressor ProteinsStreptonigrinTrans-Activators

Identifiers

PMID25006810
PMCPMC4090186
OpenAlexW2004531566

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.