Evidence map›Paper›PMID 25006248›Full record

ArticleThe Journal of biological chemistry2014

The conformational changes induced by ubiquinone binding in the Na+-pumping NADH:ubiquinone oxidoreductase (Na+-NQR) are kinetically controlled by conserved glycines 140 and 141 of the NqrB subunit.

Madeleine Strickland, Oscar Juárez, Yashvin Neehaul, Darcie A Cook, Blanca Barquera, Petra Hellwig

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Cryo-EM structures of NaNature communications · 2022
    Article
  2. The side chain of ubiquinone plays a critical role in NaBiochimica et biophysica acta. Bioenergetics · 2022
    Article
  3. Article
  4. Article
  5. Inhibitors of a NaThe Journal of biological chemistry · 2020
    Article
  6. Article
  7. Article
  8. Dynamic energy dependency ofThe Journal of biological chemistry · 2018
    Article
  9. Article
  10. Identification of the Catalytic Ubiquinone-binding Site ofThe Journal of biological chemistry · 2017
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Madeleine StricklandFrom the Laboratoire de Bioélectrochimie et Spectroscopie, UMR 7140, CNRS Université de Strasbourg, Strasbourg, France, 67000 and.
Oscar JuárezDepartment of Biological Sciences, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York 12180.
Yashvin NeehaulFrom the Laboratoire de Bioélectrochimie et Spectroscopie, UMR 7140, CNRS Université de Strasbourg, Strasbourg, France, 67000 and.
Darcie A CookDepartment of Biological Sciences, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York 12180.
Blanca BarqueraDepartment of Biological Sciences, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York 12180 barqub@rpi.edu.
Petra HellwigFrom the Laboratoire de Bioélectrochimie et Spectroscopie, UMR 7140, CNRS Université de Strasbourg, Strasbourg, France, 67000 and hellwig@unistra.fr.
Rensselaer Polytechnic Institute · USUniversité de Strasbourg · FR

Funding

Na+-pumping NADH:quinone oxidoreductase of V.choleraeR01GM069936 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI BARQUERA, BLANCA · 2004 to 2009
$941k
NIGMS NIH HHS R01 GM069936
6 · The paper itself

Abstract

Na(+)-pumping NADH:ubiquinone oxidoreductase (Na(+)-NQR) is responsible for maintaining a sodium gradient across the inner bacterial membrane. This respiratory enzyme, which couples sodium pumping to the electron transfer between NADH and ubiquinone, is not present in eukaryotes and as such could be a target for antibiotics. In this paper it is shown that the site of ubiquinone reduction is conformationally coupled to the NqrB subunit, which also hosts the final cofactor in the electron transport chain, riboflavin. Previous work showed that mutations in conserved NqrB glycine residues 140 and 141 affect ubiquinone reduction and the proper functioning of the sodium pump. Surprisingly, these mutants did not affect the dissociation constant of ubiquinone or its analog HQNO (2-n-heptyl-4-hydroxyquinoline N-oxide) from Na(+)-NQR, which indicates that these residues do not participate directly in the ubiquinone binding site but probably control its accessibility. Indeed, redox-induced difference spectroscopy showed that these mutations prevented the conformational change involved in ubiquinone binding but did not modify the signals corresponding to bound ubiquinone. Moreover, data are presented that demonstrate the NqrA subunit is able to bind ubiquinone but with a low non-catalytically relevant affinity. It is also suggested that Na(+)-NQR contains a single catalytic ubiquinone binding site and a second site that can bind ubiquinone but is not active.

Indexed as

Conserved SequenceBase SequenceDNA PrimersElectron Transport Complex IGlycineKineticsProtein BindingProtein ConformationSodium-Potassium-Exchanging ATPaseSpectroscopy, Fourier Transform InfraredUbiquinoneDNA PrimersElectron Transport Complex IGlycineSodium-Potassium-Exchanging ATPaseUbiquinoneEnzyme InhibitorHQNOInfrared Spectroscopy (IR spectroscopy)Membrane ProteinsNQROxidation-Reduction (redox)Respiratory ChainSodium PumpingUbiquinone

Identifiers

PMID25006248
PMCPMC4156058
OpenAlexW2064114356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.