Evidence map›Paper›PMID 25005734›Full record

ArticleEuropean journal of human genetics : EJHG2015

Very small deletions within the NESP55 gene in pseudohypoparathyroidism type 1b.

Faisal I Rezwan, Rebecca L Poole, Trine Prescott, Joanna M Walker, I Karen Temple, Deborah J G Mackay

Open access · hybridAbstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Faisal I RezwanHuman Genetics and Genomic medicine, Faculty of Medicine, University of Southampton, Southampton, UK.
Rebecca L Poole1] Human Genetics and Genomic medicine, Faculty of Medicine, University of Southampton, Southampton, UK [2] Wessex Regional Genetics Laboratory, Salisbury District Hospital, Salisbury NHS Foundation Trust, Salisbury, UK.
Trine PrescottDepartment of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Joanna M WalkerQueen Alexandra Hospital, Portsmouth, UK.
I Karen Temple1] Human Genetics and Genomic medicine, Faculty of Medicine, University of Southampton, Southampton, UK [2] Wessex Clinical Genetics Service, Princess Anne Hospital, University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Deborah J G Mackay1] Human Genetics and Genomic medicine, Faculty of Medicine, University of Southampton, Southampton, UK [2] Wessex Regional Genetics Laboratory, Salisbury District Hospital, Salisbury NHS Foundation Trust, Salisbury, UK.
University of Southampton · GBOslo University Hospital · NOQueen Alexandra Hospital · GBUniversity Hospital Southampton NHS Foundation Trust · GBWessex Regional Genetics Laboratory · GB

Funding

Medical Research Council MR/J000329/1
6 · The paper itself

Abstract

Pseudohypoparathyroidism (PHP) is caused by reduced expression of genes within the GNAS cluster, resulting in parathormone resistance. The cluster contains multiple imprinted transcripts, including the stimulatory G protein α subunit (Gs-α) and NESP55 transcript preferentially expressed from the maternal allele, and the paternally expressed XLas, A/B and antisense transcripts. PHP1b can be caused by loss of imprinting affecting GNAS A/B alone (associated with STX16 deletion), or the entire GNAS cluster (associated with deletions of NESP55 in a minority of cases). We performed targeted genomic next-generation sequencing (NGS) of the GNAS cluster to seek variants and indels underlying PHP1b. Seven patients were sequenced by hybridisation-based capture and fourteen more by long-range PCR and transposon-mediated insertion and sequencing. A bioinformatic pipeline was developed for variant and indel detection. In one family with two affected siblings, and in a second family with a single affected individual, we detected maternally inherited deletions of 40 and 33 bp, respectively, within the deletion previously reported in rare families with PHP1b. All three affected individuals presented with atypically severe PHP1b; interestingly, the unaffected mother in one family had the detected deletion on her maternally inherited allele. Targeted NGS can reveal sequence changes undetectable by current diagnostic methods. Identification of genetic mutations underlying epigenetic changes can facilitate accurate diagnosis and counselling, and potentially highlight genetic elements critical for normal imprint setting.

Indexed as

Gene DeletionAdolescentAllelesChild, PreschoolChromograninsComputational BiologyDNA MethylationFemaleGenetic LociGenetic VariationGenomic ImprintingGTP-Binding Protein alpha Subunits, GsHigh-Throughput Nucleotide SequencingHumansMaleMultigene FamilyChromograninsGNAS protein, humanGTP-Binding Protein alpha Subunits, GsSTX16 protein, humanSyntaxin 16

Identifiers

PMID25005734
PMCPMC4247793
OpenAlexW2118576476

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.