Evidence map›Paper›PMID 25004958›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

Bacterial periplasmic sialic acid-binding proteins exhibit a conserved binding site.

Thanuja Gangi Setty, Christine Cho, Sowmya Govindappa, Michael A Apicella, S Ramaswamy

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Structural Basis for Tetramerization ofJournal of microbiology and biotechnology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Thanuja Gangi SettyInstitute for Stem Cell Biology and Regenerative Medicine, NCBS Campus, GKVK Post, Bangalore, Karnataka 560 065, India.
Christine ChoDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242-1109, USA.
Sowmya GovindappaInstitute for Stem Cell Biology and Regenerative Medicine, NCBS Campus, GKVK Post, Bangalore, Karnataka 560 065, India.
Michael A ApicellaDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242-1109, USA.
S RamaswamyInstitute for Stem Cell Biology and Regenerative Medicine, NCBS Campus, GKVK Post, Bangalore, Karnataka 560 065, India.
Institute for Stem Cell Biology and Regenerative Medicine · INUniversity of Iowa · US

Funding

Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
Studies of the capsular-like antigen of F. tularensisP01AI044642 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 1999 to 2014
$18.2M
LIPOOLIGOSACCHARIDES OF HAEMOPHILUS INFLUENZAER01AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 1988 to 2014
$6.0M
RESEARCH TRAINING IN INFECTIOUS DISEASEST32AI007343 · NIAID · UNIVERSITY OF IOWA · PI STAPLETON, JACK T. · 1988 to 2024
$5.0M
LIPOOLIGOSACCHARIDES OF HAEMOPHILUS INFLUENZAER37AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 1994 to 2003
$1.9M
H. influenzae: Role of Sialic Acid in VirulenceR56AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2009 to 2009
$649k
Howard Hughes Medical InstituteNIAID NIH HHS AI024616NIAID NIH HHS P01 AI044642NIAID NIH HHS R01 AI024616NIAID NIH HHS R37 AI024616NIAID NIH HHS R56 AI024616NIAID NIH HHS T32 AI007343NIDDK NIH HHS P30 DK054759
6 · The paper itself

Abstract

Sialic acids are a family of related nine-carbon sugar acids that play important roles in both eukaryotes and prokaryotes. These sialic acids are incorporated/decorated onto lipooligosaccharides as terminal sugars in multiple bacteria to evade the host immune system. Many pathogenic bacteria scavenge sialic acids from their host and use them for molecular mimicry. The first step of this process is the transport of sialic acid to the cytoplasm, which often takes place using a tripartite ATP-independent transport system consisting of a periplasmic binding protein and a membrane transporter. In this paper, the structural characterization of periplasmic binding proteins from the pathogenic bacteria Fusobacterium nucleatum, Pasteurella multocida and Vibrio cholerae and their thermodynamic characterization are reported. The binding affinities of several mutations in the Neu5Ac binding site of the Haemophilus influenzae protein are also reported. The structure and the thermodynamics of the binding of sugars suggest that all of these proteins have a very well conserved binding pocket and similar binding affinities. A significant conformational change occurs when these proteins bind the sugar. While the C1 carboxylate has been identified as the primary binding site, a second conserved hydrogen-bonding network is involved in the initiation and stabilization of the conformational states.

Indexed as

Amino Acid SequenceBacterial ProteinsBase SequenceBinding SitesCalorimetryDNA PrimersEnzyme-Linked Immunosorbent AssayFusobacterium nucleatumMolecular Sequence DataN-Acetylneuraminic AcidPasteurella multocidaPeriplasmPolymerase Chain ReactionProtein ConformationSequence Homology, Amino AcidThermodynamicsBacterial ProteinsDNA PrimersN-Acetylneuraminic Acidmolecular mimicrysialic acid-binding proteinsstructure binding

Identifiers

PMID25004958
PMCPMC4089482
OpenAlexW1976088058

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.