Evidence map›Paper›PMID 25003611›Full record

ArticlePloS one2014

A good compromise: rapid and robust species proxies for inventorying biodiversity hotspots using the Terebridae (Gastropoda: Conoidea).

Maria Vittoria Modica, Nicolas Puillandre, Magalie Castelin, Yu Zhang, Mandë Holford

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Maria Vittoria ModicaDepartment of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Roma, Italy; Department of Chemistry, Hunter College, City University of New York, New York, New York, United States of America.
Nicolas PuillandreDépartement Systématique et Evolution, "Systématique, Adaptation et Evolution", UMR 7138, Muséum National d'Histoire Naturelle, CP 26, Paris, France.
Magalie CastelinDépartement Systématique et Evolution, "Systématique, Adaptation et Evolution", UMR 7138, Muséum National d'Histoire Naturelle, CP 26, Paris, France; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada; Department of Chemistry, Hunter College, City University of New York, New York, New York, United States of America.
Yu ZhangErnst & Young, New York, New York, United States of America.
Mandë HolfordDepartment of Chemistry, Hunter College, City University of New York, New York, New York, United States of America; Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America.
Hunter College · USCity University of New York · USErnst & Young (United States) · USInstitut de Systématique, Évolution, Biodiversité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Devising a reproducible approach for species delimitation of hyperdiverse groups is an ongoing challenge in evolutionary biology. Speciation processes combine modes of passive and adaptive trait divergence requiring an integrative taxonomy approach to accurately generate robust species hypotheses. However, in light of the rapid decline of diversity on Earth, complete integrative approaches may not be practical in certain species-rich environments. As an alternative, we applied a two-step strategy combining ABGD (Automated Barcode Gap Discovery) and Klee diagrams, to balance speed and accuracy in producing primary species hypotheses (PSHs). Specifically, an ABGD/Klee approach was used for species delimitation in the Terebridae, a neurotoxin-producing marine snail family included in the Conoidea. Delimitation of species boundaries is problematic in the Conoidea, as traditional taxonomic approaches are hampered by the high levels of variation, convergence and morphological plasticity of shell characters. We used ABGD to analyze gaps in the distribution of pairwise distances of 454 COI sequences attributed to 87 morphospecies and obtained 98 to 125 Primary Species Hypotheses (PSHs). The PSH partitions were subsequently visualized as a Klee diagram color map, allowing easy detection of the incongruences that were further evaluated individually with two other species delimitation models, General Mixed Yule Coalescent (GMYC) and Poisson Tree Processes (PTP). GMYC and PTP results confirmed the presence of 17 putative cryptic terebrid species in our dataset. The consensus of GMYC, PTP, and ABGD/Klee findings suggest the combination of ABGD and Klee diagrams is an effective approach for rapidly proposing primary species proxies in hyperdiverse groups and a reliable first step for macroscopic biodiversity assessment.

Indexed as

BiodiversityAnimalsDNA Barcoding, TaxonomicPacific OceanPhylogenySnails

Identifiers

PMID25003611
PMCPMC4086986
OpenAlexW2050214336

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.