Evidence map›Paper›PMID 25003509›Full record

ArticlePloS one2014

The genetic structure of Staphylococcus aureus populations from the Southwest Pacific.

Stephen R Ritchie, Mark G Thomas, Paul B Rainey

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. TheJournal of clinical microbiology · 2025
    Review
  2. Characterisation of PVL-PositiveAntibiotics (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
  5. Investigation of aInternational journal of molecular sciences · 2020
    Article
  6. Article
  7. Article
  8. Comparison of community-onset Staphylococcus argenteus and Staphylococcus aureus sepsis in Thailand: a prospective multicentre observational study.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2016
    Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Stephen R RitchieNZ Institute for Advanced Study and Allan Wilson Centre for Molecular Ecology and Evolution, Massey University, Auckland, New Zealand; Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Mark G ThomasDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Paul B RaineyNZ Institute for Advanced Study and Allan Wilson Centre for Molecular Ecology and Evolution, Massey University, Auckland, New Zealand; Max Planck Institute for Evolutionary Biology, Plön, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic structure of Staphylococcus aureus populations sampled from diverse regions of the globe have been the subject of numerous investigations. Here we describe the structure of S. aureus populations collected from the Southwest Pacific. Multi-locus sequence typing was performed on 467 isolates obtained from people with nasal colonization or bacteremia in Auckland (NZ), and patients predominantly affected by skin and soft tissue infection in Samoa, Fiji and Tonga. The predominant sequence types (STs) varied between Auckland (ST5), Fiji (ST30), and Samoa (ST1), however, the overall genetic diversity within each region did not differ significantly between locations. Divergent Clonal Complex 75 (CC75) strains were isolated in Auckland and Fiji. When diversity of the Southwest Pacific populations was compared with those previously described from Asia, Europe, North America and Africa no significant differences were detected. With the exception of CC75 strains, the global collection of S. aureus encompasses relatively little diversity, with novel STs arising locally from a small number of widespread lineages.

Indexed as

Evolution, MolecularGenetic VariationHumansMultilocus Sequence TypingPacific OceanPhylogeographyRecombination, GeneticStaphylococcus aureus

Identifiers

PMID25003509
PMCPMC4086726

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.