Evidence map›Paper›PMID 25003466›Full record

ArticlePloS one2014

Analysis of the transcriptome in hyperoxic lung injury and sex-specific alterations in gene expression.

Krithika Lingappan, Chandra Srinivasan, Weiwu Jiang, Lihua Wang, Xanthi I Couroucli, Bhagavatula Moorthy

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. The Central Role of Cytochrome P450 Reductase (CPR) in Hyperoxic Lung Injury.Expert opinion on drug metabolism & toxicology · 2025
    Review
  7. Article
  8. Loss of growth differentiation factor 15 exacerbates lung injury in neonatal mice.American journal of physiology. Lung cellular and molecular physiology · 2023
    Article
  9. Complex roles of TGF-β signaling pathways in lung development and bronchopulmonary dysplasia.American journal of physiology. Lung cellular and molecular physiology · 2023
    Review
  10. Review
  11. Early extubation to noninvasive respiratory support of former preterm lambs improves long-term respiratory outcomes.American journal of physiology. Lung cellular and molecular physiology · 2021
    Article
  12. Review
  13. Article
  14. Article
  15. Former-preterm lambs have persistent alveolar simplification at 2 and 5 months corrected postnatal age.American journal of physiology. Lung cellular and molecular physiology · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Observational
  20. Sex-specific differences in neonatal hyperoxic lung injury.American journal of physiology. Lung cellular and molecular physiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Krithika LingappanDepartment of Pediatrics, Section of Neonatology, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas, United States of America.
Chandra SrinivasanDivision of Pediatric Cardiology, Department of Pediatrics, University of Texas Medical School at Houston, Houston, Texas, United States of America.
Weiwu JiangDepartment of Pediatrics, Section of Neonatology, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas, United States of America.
Lihua WangDepartment of Pediatrics, Section of Neonatology, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas, United States of America.
Xanthi I CouroucliDepartment of Pediatrics, Section of Neonatology, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas, United States of America.
Bhagavatula MoorthyDepartment of Pediatrics, Section of Neonatology, Texas Children's Hospital, Baylor College of Medicine, Houston, Texas, United States of America.
Texas Children's Hospital · USBaylor College of Medicine · US

Funding

MOLECULAR MECHANISMS OF CYTOCHROME P4501A1 EXPRESSIONR01ES009132 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI MOORTHY, BHAGAVATULA · 1998 to 2017
$3.8M
TARGETED GENOMICS FACILITY COREP30ES023512 · NIEHS · TEXAS A&M AGRILIFE RESEARCH · PI DEUTZ, NICOLAAS E · 2014 to 2017
$3.3M
Functional roles of Nrf2 and NQO1 genetic variants in hyperoxic lung injury-ARDSR01HL112516 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MOORTHY, BHAGAVATULA · 2012 to 2016
$2.9M
Role of cytochrome P4501B1 in oxygen-mediated pulmonary injuryR01ES019689 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI MOORTHY, BHAGAVATULA · 2011 to 2015
$2.1M
Role of hepatic and pulmonary P4501A enzymes in neonatal hyperoxic tissue injuryR01HL088343 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COUROUCLI, XANTHI IOANNA · 2009 to 2013
$1.9M
Roles of pulmonary and hepatic P4501A enzymes in hyperoxic lung injury in miceR01HL087174 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MOORTHY, BHAGAVATULA · 2007 to 2010
$1.5M
NHLBI NIH HHS HL-087174NHLBI NIH HHS HL-088343NHLBI NIH HHS HL-112516NHLBI NIH HHS R01 HL087174NHLBI NIH HHS R01 HL088343NHLBI NIH HHS R01 HL112516NIEHS NIH HHS ES-001932NIEHS NIH HHS ES-019689NIEHS NIH HHS P30 ES023512NIEHS NIH HHS R01 ES009132NIEHS NIH HHS R01 ES019689
6 · The paper itself

Abstract

Exposure to high concentration of oxygen (hyperoxia) leads to lung injury in experimental animal models and plays a role in the pathogenesis of diseases such as Acute Respiratory Distress Syndrome (ARDS) and Bronchopulmonary dysplasia (BPD) in humans. The mechanisms responsible for sex differences in the susceptibility towards hyperoxic lung injury remain largely unknown. The major goal of this study was to characterize the changes in the pulmonary transcriptome following hyperoxia exposure and further elucidate the sex-specific changes. Male and female (8-10 wk) wild type (WT) (C57BL/6J) mice were exposed to hyperoxia (FiO2>0.95) and gene expression in lung tissues was studied at 48 h. A combination of fold change ≥1.4 and false discovery rate (FDR)<5% was used to define differentially expressed genes (DEGs). Overrepresentation of gene ontology terms representing biological processes and signaling pathway impact analysis (SPIA) was performed. Comparison of DEG profiles identified 327 genes unique to females, 585 unique to males and 1882 common genes. The major new findings of this study are the identification of new candidate genes of interest and the sex-specific transcriptomic changes in hyperoxic lung injury. We also identified DEGs involved in signaling pathways like MAP kinase and NF-kappa B which may explain the differences in sex-specific susceptibility to hyperoxic lung injury. These findings highlight changes in the pulmonary transcriptome and sex-specific differences in hyperoxic lung injury, and suggest new pathways, whose components could serve as sex-specific biomarkers and possible therapeutic targets for acute lung injury (ALI)/acute respiratory distress (ARDS) in humans.

Indexed as

Gene Expression RegulationTranscriptomeAcute Lung InjuryAmino Acid Transport System y+AnimalsFemaleGene Expression ProfilingHyperoxiaImmunohistochemistryMaleMiceReproducibility of ResultsSex FactorsSignal TransductionAmino Acid Transport System y+Slc7a11 protein, mouse

Identifiers

PMID25003466
PMCPMC4086819
OpenAlexW2059594441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.