Evidence map›Paper›PMID 25003254›Full record

ArticleOncotarget2014

nc886, a non-coding RNA of anti-proliferative role, is suppressed by CpG DNA methylation in human gastric cancer.

Kwang-Soo Lee, Jong-Lyul Park, Kwanbok Lee, Lauren E Richardson, Betty H Johnson, Hyun-Sung Lee, Ju-Seog Lee, Sang-Bae Kim, Oh-Hyung Kwon, Kyu Sang Song and 6 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Intracellular and Extracellular Vesicle miRNA Signatures in Human iPSC-Derived Neural Stem Cells and Floor Plate Progenitors.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  6. Role of Extracellular Vesicles in TSC Renal Cystogenesis.International journal of molecular sciences · 2025
    Article
  7. Non-coding 886 (Epigenetics · 2024
    Review
  8. Review
  9. Article
  10. Human Vault RNAs: Exploring Their Potential Role in Cellular Metabolism.International journal of molecular sciences · 2024
    Review
  11. Crosstalk between vault RNAs and innate immunity.Molecular biology reports · 2024
    Review
  12. Review
  13. Review
  14. Effects of Helicobacter pylori Infection on the Development of Chronic Gastritis.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2023
    Article
  15. Review
  16. Hypermethylation ofMolecular therapy. Nucleic acids · 2022
    Article
  17. Article
  18. Review
  19. Are We Studying Non-Coding RNAs Correctly? Lessons from nc886.International journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 2 countries.

Kwang-Soo LeeDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX77555-1072, USA; Department of Life Science and Center for Aging and Health Care, Hallym University, Chuncheon 200-702, Korea.
Jong-Lyul Park
Kwanbok Lee
Lauren E Richardson
Betty H Johnson
Hyun-Sung Lee
Ju-Seog Lee
Sang-Bae Kim
Oh-Hyung Kwon
Kyu Sang Song
Yong Sung Kim
Hassan Ashktorab
Duane T Smoot
Sung Ho JeonDepartment of Life Science and Center for Aging and Health Care, Hallym University, Chuncheon 200-702, Korea.
Seon-Young KimMedical Genomics Research Center, KRIBB, Daejeon 305-806, Korea;Department of Functional Genomics, University of Science and Technology, Daejeon, 305-806, Korea.
Yong Sun LeeDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX77555-1072, USA.
The University of Texas MD Anderson Cancer Center · USThe University of Texas Medical Branch at Galveston · USHallym University · KRHoward University · USKorea Research Institute of Bioscience and Biotechnology · KRChungnam National University · KRGenome Research Foundation · KRKorea University of Science and Technology · KRLamar University · US

Funding

STRUCTURAL/FUNCTIONAL CHARACTERIZATION OF AMINOGLYCOSIDEG12RR003048 · NCRR · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 1985 to 2011
$19.0M
PROTEOMICS CORE FACILITYG12MD007597 · NIMHD · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 2012 to 2018
$14.8M
DEVELOPMENT AND VALIDATION OF PROGNOSTIC MODEL FOR GASTRIC CANCERR01CA150229 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LEE, JU-SEOG · 2010 to 2013
$1.1M
HSRD VA CDP 12-187NCI NIH HHS R01 CA150229NCRR NIH HHS G12 RR003048NCRR NIH HHS G12RR003048NIMHD NIH HHS G12 MD007597NIMHD NIH HHS G12MD007597
6 · The paper itself

Abstract

nc886 is a 101 nucleotide long non-coding RNA that has been designated as a precursor microRNA or a vault RNA based upon it sequence. nc886 has also been suggested to be a tumor suppressor, mainly inferred by its expression pattern as well as its genomic location at human chromosome 5q31, a locus for a tumor suppressor gene(s). However, legitimate data based on nc886's correct identity for its functional cellular roles as a tumor suppressor have not been provided yet. Here we have investigated nc886 in gastric cancer where its expression is suppressed due to CpG DNA hypermethylation at its promoter region in a cohort of paired tumor/normal tissues from 88 gastric cancer patients. CpG hypermethylation of nc886 and thus its diminished expression is significantly associated with poor survival in these cancer patients. nc886 inhibits cell proliferation when ectopically expressed in gastric cancer cells. nc886's tumor suppressive role is corroborated by the induction of well-known oncogenes such as FOS, NF-κB, and MYC upon its knockdown. All these activities of nc886 are undoubtedly independent of mature microRNA or vault RNA. Our data indicate that nc886 is a putative tumor suppressor and could potentially be used as a diagnostic marker in gastric cancer.

Indexed as

CpG IslandsDNA MethylationCell Growth ProcessesCell Line, TumorHumansRNA, UntranslatedStomach NeoplasmsTransfectionRNA, Untranslated

Identifiers

PMID25003254
PMCPMC4116533
OpenAlexW2147764514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.