Evidence map›Paper›PMID 25002673›Full record

ArticleRNA (New York, N.Y.)2014

The role of RNA structure at 5' untranslated region in microRNA-mediated gene regulation.

Wanjun Gu, Yuming Xu, Xueying Xie, Ting Wang, Jae-Hong Ko, Tong Zhou

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Pooled it
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  15. Review
  16. The Functional Meaning of 5'UTR in Protein-Coding Genes.International journal of molecular sciences · 2023
    Review
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  18. Review
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Wanjun GuResearch Center for Learning Sciences, Southeast University, Nanjing, Jiangsu 210096, China Wanjun.Gu@gmail.com akdongyi01@cau.ac.kr tongzhou@email.arizona.edu.
Yuming XuSchool of Biological Sciences and Medical Engineering, Southeast University, Nanjing, Jiangsu 210096, China.
Xueying XieResearch Center for Learning Sciences, Southeast University, Nanjing, Jiangsu 210096, China.
Ting WangDepartment of Medicine, University of Arizona, Tucson, Arizona 85721, USA.
Jae-Hong KoDepartment of Physiology, College of Medicine, Chung-Ang University, Seoul 156-756, South Korea.
Tong ZhouDepartment of Medicine, University of Arizona, Tucson, Arizona 85721, USA.
Southeast University · CNUniversity of Arizona · USChung-Ang University · KR

Funding

Selectively targeting delta opioid receptor subtypes to control drinking behaviorR01AA020401 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WHISTLER, JENNIFER L · 2011 to 2015
$1.8M
NIAAA NIH HHS R01 AA020401
6 · The paper itself

Abstract

Recent studies have suggested that the secondary structure of the 5' untranslated region (5' UTR) of messenger RNA (mRNA) is important for microRNA (miRNA)-mediated gene regulation in humans. mRNAs that are targeted by miRNA tend to have a higher degree of local secondary structure in their 5' UTR; however, the general role of the 5' UTR in miRNA-mediated gene regulation remains unknown. We systematically surveyed the secondary structure of 5' UTRs in both plant and animal species and found a universal trend of increased mRNA stability near the 5' cap in mRNAs that are regulated by miRNA in animals, but not in plants. Intra-genome comparison showed that gene expression level, GC content of the 5' UTR, number of miRNA target sites, and 5' UTR length may influence mRNA structure near the 5' cap. Our results suggest that the 5' UTR secondary structure performs multiple functions in regulating post-transcriptional processes. Although the local structure immediately upstream of the start codon is involved in translation initiation, RNA structure near the 5' cap site, rather than the structure of the full-length 5' UTR sequences, plays an important role in miRNA-mediated gene regulation.

Indexed as

5' Untranslated RegionsGene Expression RegulationNucleic Acid ConformationAnimalsArabidopsisBase CompositionBinding SitesCaenorhabditis elegansDrosophila melanogasterHumansMiceMicroRNAsRNARNA CapsRNA Stability5' Untranslated RegionsMicroRNAsRNARNA Caps5′ untranslated regiongene regulationmicroRNARNA structure

Identifiers

PMID25002673
PMCPMC4138320
OpenAlexW2123770273

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.