Evidence map›Paper›PMID 25002546›Full record

ArticleJournal of bacteriology2014

The RimL transacetylase provides resistance to translation inhibitor microcin C.

Teymur Kazakov, Konstantin Kuznedelov, Ekaterina Semenova, Damir Mukhamedyarov, Kirill A Datsenko, Anastasija Metlitskaya, Gaston H Vondenhoff, Anton Tikhonov, Vinayak Agarwal, Satish Nair and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Whole genome sequencing distinguishes skin colonizing from infection-associatedFrontiers in cellular and infection microbiology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Small-Molecule Acetylation by GCN5-RelatedMicrobiology and molecular biology reviews : MMBR · 2020
    Review
  14. Review
  15. Review
  16. Microcins inFrontiers in microbiology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Teymur KazakovWaksman Institute, Piscataway, New Jersey, USA.
Konstantin KuznedelovWaksman Institute, Piscataway, New Jersey, USA.
Ekaterina SemenovaWaksman Institute, Piscataway, New Jersey, USA.
Damir MukhamedyarovWaksman Institute, Piscataway, New Jersey, USA.
Kirill A DatsenkoPurdue University, West Lafayette, Indiana, USA.
Anastasija MetlitskayaInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia.
Gaston H VondenhoffLaboratory of Medicinal Chemistry, Rega Institute for Medical Research, K.U. Leuven, Leuven, Belgium.
Anton TikhonovInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Vinayak AgarwalUniversity of Illinois, Urbana, Illinois, USA.
Satish NairUniversity of Illinois, Urbana, Illinois, USA.
Arthur Van AerschotLaboratory of Medicinal Chemistry, Rega Institute for Medical Research, K.U. Leuven, Leuven, Belgium.
Konstantin SeverinovWaksman Institute, Piscataway, New Jersey, USA Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia St. Petersburg State Polytechnical University, St. Petersburg, Russia Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia Skolkovo Institute of Science and Technology, Skolkovo, Russia severik@waksman.rutgers.edu.
Ackerman Institute for the Family · USInstitute of Molecular Genetics · RUUniversity of Illinois System · USInstitute of Gene Biology · RUKU Leuven · BEPurdue University West Lafayette · USRega Institute for Medical Research · BE

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
NIAID NIH HHS U54 AI057158
6 · The paper itself

Abstract

Peptide-nucleotide antibiotic microcin C (McC) is produced by some Escherichia coli strains. Inside a sensitive cell, McC is processed, releasing a nonhydrolyzable analog of aspartyl-adenylate, which inhibits aspartyl-tRNA synthetase. The product of mccE, a gene from the plasmid-borne McC biosynthetic cluster, acetylates processed McC, converting it into a nontoxic compound. MccE is homologous to chromosomally encoded acetyltransferases RimI, RimJ, and RimL, which acetylate, correspondingly, the N termini of ribosomal proteins S18, S5, and L12. Here, we show that E. coli RimL, but not other Rim acetyltransferases, provides a basal level of resistance to McC and various toxic nonhydrolyzable aminoacyl adenylates. RimL acts by acetylating processed McC, which along with ribosomal protein L12 should be considered a natural RimL substrate. When overproduced, RimL also makes cells resistant to albomycin, an antibiotic that upon intracellular processing gives rise to a seryl-thioribosyl pyrimidine that targets seryl-tRNA synthetase. We further show that E. coli YhhY, a protein related to Rim acetyltransferases but without a known function, is also able to detoxify several nonhydrolyzable aminoacyl adenylates but not processed McC. We propose that RimL and YhhY protect bacteria from various toxic aminoacyl nucleotides, either exogenous or those generated inside the cell during normal metabolism.

Indexed as

Peptide Chain Initiation, TranslationalAcetyltransferasesAdenosine MonophosphateAspartic AcidBacteriocinsEscherichia coliEscherichia coli ProteinsAcetyltransferasesAdenosine MonophosphateAspartic Acidaspartyl adenylateBacteriocinsEscherichia coli ProteinsmicrocinRimL protein, E coli

Identifiers

PMID25002546
PMCPMC4187662
OpenAlexW2025147903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.