Evidence map›Paper›PMID 25002518›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision.

Ying Guo, Sivakumar Sekharan, Jian Liu, Victor S Batista, John C Tully, Elsa C Y Yan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Action and Ion Mobility Spectroscopy of a Shortened Retinal Derivative.Journal of the American Society for Mass Spectrometry · 2018
    Article
  7. Evolution of nonspectral rhodopsin function at high altitudes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ying GuoDepartment of Chemistry, Yale University, New Haven, CT 06520.
Sivakumar SekharanDepartment of Chemistry, Yale University, New Haven, CT 06520.
Jian LiuDepartment of Chemistry, Yale University, New Haven, CT 06520.
Victor S BatistaDepartment of Chemistry, Yale University, New Haven, CT 06520.
John C TullyDepartment of Chemistry, Yale University, New Haven, CT 06520 john.tully@yale.edu elsa.yan@yale.edu.
Elsa C Y YanDepartment of Chemistry, Yale University, New Haven, CT 06520 john.tully@yale.edu elsa.yan@yale.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present measurements of rate constants for thermal-induced reactions of the 11-cis retinyl chromophore in vertebrate visual pigment rhodopsin, a process that produces noise and limits the sensitivity of vision in dim light. At temperatures of 52.0-64.6 °C, the rate constants fit well to an Arrhenius straight line with, however, an unexpectedly large activation energy of 114 ± 8 kcal/mol, which is much larger than the 60-kcal/mol photoactivation energy at 500 nm. Moreover, we obtain an unprecedentedly large prefactor of 10(72±5) s(-1), which is roughly 60 orders of magnitude larger than typical frequencies of molecular motions! At lower temperatures, the measured Arrhenius parameters become more normal: Ea = 22 ± 2 kcal/mol and Apref = 10(9±1) s(-1) in the range of 37.0-44.5 °C. We present a theoretical framework and supporting calculations that attribute this unusual temperature-dependent kinetics of rhodopsin to a lowering of the reaction barrier at higher temperatures due to entropy-driven partial breakup of the rigid hydrogen-bonding network that hinders the reaction at lower temperatures.

Indexed as

LightTemperatureAnimalsCattleHEK293 CellsHumansKineticsModels, MolecularPhotoreceptor Cells, VertebrateRhodopsinSpectrophotometry, UltravioletVertebratesVision, OcularWaterRhodopsinWaterdim-light visionisomerization ratenon-Arrheniustransition state theory

Identifiers

PMID25002518
PMCPMC4115513

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.