Evidence map›Paper›PMID 25002490›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Enhancement of protein expression by alphavirus replicons by designing self-replicating subgenomic RNAs.

Dal Young Kim, Svetlana Atasheva, Alexander J McAuley, Jessica A Plante, Elena I Frolova, David W C Beasley, Ilya Frolov

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. mRNA medicine for cardiovascular disease.Nature cardiovascular research · 2026
    Review
  7. Review
  8. Building better mRNA for therapeutics.Nature biotechnology · 2025
    Article
  9. The advent of clinical self-amplifying RNA vaccines.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Messenger RNA-Based Therapeutics and Vaccines: What's beyond COVID-19?ACS pharmacology & translational science · 2023
    Review
  16. Review
  17. Article
  18. Vaccinations in pregnancy against TORCH pathogens.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  19. Evaluation of repRNA vaccine for induction and in utero transfer of maternal antibodies in a pregnant rabbit model.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  20. Construction of a mini-RNA replicon inSynthetic biology (Oxford, England) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Dal Young KimDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294;
Svetlana AtashevaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294;
Alexander J McAuleyDepartment of Microbiology and Immunology.ORCID http://orcid.org/0000-0002-7632-9633
Jessica A PlanteDepartment of Pathology, and.
Elena I FrolovaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294;
David W C BeasleyDepartment of Microbiology and Immunology,Sealy Center for Vaccine Development and Institute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX 77555.
Ilya FrolovDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294; ivfrolov@uab.edu.
University of Alabama at Birmingham · US

Funding

Biodefense Training ProgramT32AI060549 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ASHOK K CHOPRA, Janice J Endsley · 2004 to 2026
$3.0M
Mechanism of alphavirus packaging: designing of pseudoinfectious virusesR01AI095449 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2012 to 2016
$1.8M
The Molecular Basis of VEEV PathogenesisR01AI070207 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOV, ILYA V. · 2008 to 2012
$1.6M
Sindbis nonstructural protein nsP2: Interaction with cellular proteinsR01AI073301 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOVA, ELENA I · 2008 to 2012
$1.6M
NIAID NIH HHS R01 AI070207NIAID NIH HHS R01AI070207NIAID NIH HHS R01 AI073301NIAID NIH HHS R01AI073301NIAID NIH HHS R01 AI095449NIAID NIH HHS R01AI095449NIAID NIH HHS T32 AI060549NIAID NIH HHS T32-AI060549
6 · The paper itself

Abstract

Since the development of infectious cDNA clones of viral RNA genomes and the means of delivery of the in vitro-synthesized RNA into cells, alphaviruses have become an attractive system for expression of heterologous genetic information. Alphaviruses replicate exclusively in the cytoplasm, and their genetic material cannot recombine with cellular DNA. Alphavirus genome-based, self-replicating RNAs (replicons) are widely used vectors for expression of heterologous proteins. Their current design relies on replacement of structural genes, encoded by subgenomic RNAs (SG RNA), with heterologous sequences of interest. The SG RNA is transcribed from a promoter located in the alphavirus-specific RNA replication intermediate and is not further amplified. In this study, we have applied the accumulated knowledge of the mechanism of alphavirus replication and promoter structures, in particular, to increase the expression level of heterologous proteins from Venezuelan equine encephalitis virus (VEEV)-based replicons. During VEEV infection, replication enzymes are produced in excess to RNA replication intermediates, and a large fraction of them are not involved in RNA synthesis. The newly designed constructs encode SG RNAs, which are not only transcribed from the SG promoter, but are additionally amplified by the previously underused VEEV replication enzymes. These replicons produce SG RNAs and encoded proteins of interest 10- to 50-fold more efficiently than those using a traditional design. A modified replicon encoding West Nile virus (WNV) premembrane and envelope proteins efficiently produced subviral particles and, after a single immunization, elicited high titers of neutralizing antibodies, which protected mice from lethal challenge with WNV.

Indexed as

AlphavirusAnimalsAntibodies, NeutralizingEncephalitis Virus, Venezuelan EquineGene ExpressionGenetic VectorsGenome, ViralGreen Fluorescent ProteinsInterferon-betaIntracellular SpaceMiceProtein BiosynthesisRepliconRNA InterferenceRNA, ViralViral ProteinsAntibodies, NeutralizingGreen Fluorescent ProteinsInterferon-betaRNA, ViralViral Proteinsexpression vectorsvaccines

Identifiers

PMID25002490
PMCPMC4115546
OpenAlexW1987728748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.