Evidence map›Paper›PMID 25002433›Full record

ArticleApplied and environmental microbiology2014

Chitin accelerates activation of a novel haloarchaeal serine protease that deproteinizes chitin-containing biomass.

Yaoxin Zhang, Mengxin Wang, Xin Du, Wei Tang, Li Zhang, Moran Li, Jian Wang, Bing Tang, Xiao-Feng Tang

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. HtrAs are essential for the survival of the haloarchaeonApplied and environmental microbiology · 2024
    Article
  6. Expression, purification, and enzymatic characterization of an extracellular protease from Halococcus salifodinae.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Sec-Dependent Secretion of Subtilase SptE inApplied and environmental microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Halophiles and their enzymes: negativity put to good use.Current opinion in microbiology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yaoxin ZhangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Mengxin WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Xin DuState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Wei TangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Li ZhangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Moran LiState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Jian WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Bing TangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, Wuhan, China.
Xiao-Feng TangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, Wuhan, China tangxf@whu.edu.cn.
Wuhan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The haloarchaeon Natrinema sp. strain J7-2 has the ability to degrade chitin, and its genome harbors a chitin metabolism-related gene cluster that contains a halolysin gene, sptC. The sptC gene encodes a precursor composed of a signal peptide, an N-terminal propeptide consisting of a core domain (N*) and a linker peptide, a subtilisin-like catalytic domain, a polycystic kidney disease domain (PkdD), and a chitin-binding domain (ChBD). Here we report that the autocatalytic maturation of SptC is initiated by cis-processing of N* to yield an autoprocessed complex (N*-I(WT)), followed by trans-processing/degradation of the linker peptide, the ChBD, and N*. The resulting mature form (M(WT)) containing the catalytic domain and the PkdD showed optimum azocaseinolytic activity at 3 to 3.5 M NaCl, demonstrating salt-dependent stability. Deletion analysis revealed that the PkdD did not confer extra stability on the enzyme but did contribute to enzymatic activity. The ChBD exhibited salt-dependent chitin-binding capacity and mediated the binding of N*-I(WT) to chitin. ChBD-mediated chitin binding enhances SptC maturation by promoting activation of the autoprocessed complex. Our results also demonstrate that SptC is capable of removing proteins from shrimp shell powder (SSP) at high salt concentrations. Interestingly, N*-I(WT) released soluble peptides from SSP faster than did M(WT). Most likely, ChBD-mediated binding of the autoprocessed complex to chitin in SSP not only accelerates enzyme activation but also facilitates the deproteinization process by increasing the local protease concentration around the substrate. By virtue of these properties, SptC is highly attractive for use in preparation of chitin from chitin-containing biomass.

Indexed as

Gene Expression Regulation, EnzymologicCaseinsChitinEnzyme StabilityHalobacteriaceaeProtein BindingProtein Processing, Post-TranslationalSerine ProteasesSodium ChlorideazocaseinCaseinsChitinSerine ProteasesSodium Chloride

Identifiers

PMID25002433
PMCPMC4178621
OpenAlexW2167942580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.