Evidence map›Paper›PMID 25002145›Full record

ArticleMolecular cell2014

Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.

Weiqiang Qian, Daisuke Miki, Mingguang Lei, Xiaohong Zhu, Huiming Zhang, Yunhua Liu, Yan Li, Zhaobo Lang, Jing Wang, Kai Tang and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Fine mapping and characterization ofFrontiers in genetics · 2022
    Article
  12. Article
  13. Characterization of Local and Systemic Impact of Whitefly (International journal of molecular sciences · 2020
    Article
  14. Active DNA Demethylation in Plants.International journal of molecular sciences · 2019
    Review
  15. Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Peroxisomal β-oxidation regulates histone acetylation and DNA methylation inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Dynamics and function of DNA methylation in plants.Nature reviews. Molecular cell biology · 2018
    Review
  18. FACT complex is required for DNA demethylation at heterochromatin during reproduction inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Weiqiang QianShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Daisuke MikiShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
Mingguang LeiDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Xiaohong ZhuDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Huiming ZhangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Yunhua LiuDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Yan LiShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
Zhaobo LangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Jing WangShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
Kai TangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA.
Renyi LiuShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
Jian-Kang ZhuShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47906, USA. Electronic address: jkzhu@purdue.edu.
Chinese Academy of Sciences · CNPurdue University West Lafayette · US

Funding

CALCIUM SIGNALING--INTRACELL ION HOMEOSTASIS REGULATIONR01GM059138 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 1999 to 2015
$4.4M
DNA Demethylation and Transcriptional Gene SilencingR01GM070795 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 2004 to 2015
$4.0M
NIGMS NIH HHS R01 GM059138NIGMS NIH HHS R01GM059138NIGMS NIH HHS R01 GM070795NIGMS NIH HHS R01GM070795
6 · The paper itself

Abstract

DNA methylation patterns are dynamically controlled by DNA methylation and active DNA demethylation, but the mechanisms of regulation of active DNA demethylation are not well understood. Through forward genetic screens for Arabidopsis mutants showing DNA hypermethylation at specific loci and increased silencing of reporter genes, we identified IDM2 (increased DNA methylation 2) as a regulator of DNA demethylation and gene silencing. IDM2 dysfunction causes DNA hypermethylation and silencing of reporter genes and some endogenous genes. These effects of idm2 mutations are similar to those of mutations in IDM1, a regulator of active DNA demethylation. IDM2 encodes an α-crystallin domain protein in the nucleus. IDM2 and IDM1 interact physically and partially colocalize at discrete subnuclear foci. IDM2 is required for the full activity of H3K18 acetylation but not H3K23 acetylation of IDM1 in planta. Our results suggest that IDM2 functions in active DNA demethylation and in antisilencing by regulating IDM1.

Indexed as

AcetylationArabidopsisArabidopsis ProteinsDNA MethylationDNA, PlantGene Expression Regulation, PlantGene SilencingGenes, PlantHistone AcetyltransferasesHistonesMutationNuclear ProteinsProtein Interaction Domains and MotifsProtein Structure, TertiaryArabidopsis ProteinsDNA, PlantHistone AcetyltransferasesHistonesIDM1 protein, ArabidopsisIDM2 protein, ArabidopsisNuclear Proteins

Identifiers

PMID25002145
PMCPMC4302764
OpenAlexW2148620949

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.