Evidence map›Paper›PMID 24999842›Full record

ArticlePloS one2014

Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.

Chad Garner, Richard Ahn, Yuan Chun Ding, Linda Steele, Samantha Stoven, Peter H Green, Alessio Fasano, Joseph A Murray, Susan L Neuhausen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 2 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 2 syntheses or guidelines pooled it, 67 citations in OpenAlex.

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  17. Detection of c.139G>A (D47N) mutation inJournal of genetics · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Chad GarnerEpidemiology Department, School of Medicine, University of California Irvine, Irvine, California, United States of America.
Richard AhnEpidemiology Department, School of Medicine, University of California Irvine, Irvine, California, United States of America.
Yuan Chun DingPopulation Sciences Department, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Linda SteelePopulation Sciences Department, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Samantha StovenDivision of Gastroenterology and Hepatology, Department of Immunology, Mayo Clinic, Rochester, MN, United States of America.
Peter H GreenCeliac Disease Center, Columbia University, New York City, New York, United States of America.
Alessio FasanoCenter for Celiac Research, MassGeneral Hospital for Children, Boston, MA, United States of America.
Joseph A MurrayDivision of Gastroenterology and Hepatology, Department of Immunology, Mayo Clinic, Rochester, MN, United States of America.
Susan L NeuhausenPopulation Sciences Department, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Beckman Research InstituteMayo Clinic in Arizona · USUniversity of California, Irvine · USColumbia University · USMaineGeneral Medical Center · US

Funding

EPIDEMIOLOGY OF CELIAC DISEASE--A POPULATION BASED STUDYR01DK057892 · NIDDK · MAYO CLINIC ROCHESTER · PI MURRAY, JOSEPH A · 2000 to 2010
$3.9M
Genome-Wide Association Study in Celiac DiseaseR01DK081645 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI GARNER, CHAD P, NEUHAUSEN, SUSAN L. · 2009 to 2011
$2.8M
NIDDK NIH HHS DK081645NIDDK NIH HHS R01 DK057892NIDDK NIH HHS R01 DK081645
6 · The paper itself

Abstract

We performed a genome-wide association study (GWAS) of 1550 North American celiac disease cases and 3084 controls. Twelve SNPs, distributed across four regions (3p21.31, 4q27, 6q15, 6q25), were significantly associated with disease (p-value <1.0×10-7), and a further seven SNPs, across four additional regions (1q24.3, 10p15.1, 6q22.31, 17q21.32) had suggestive evidence (1.0×10-7 < p-value < 1.0×10-6). This study replicated a previous suggestive association within FRMD4B (3p14.1), confirming it as a celiac disease locus. All four regions with significant associations and two regions with suggestive results (1q24.3, 10p15.1) were known disease loci. The 6q22.31 and 10p11.23 regions were not replicated. A total of 410 SNPs distributed across the eight significant and suggestive regions were tested for association with dermatitis herpetiformis and microscopic colitis. Preliminary, suggestive statistical evidence for association with the two traits was found at chromosomes 3p21.31, 6q15, 6q25, 1q24.3 and 10p11.23, with future studies being required to validate the reported associations.

Indexed as

Genome-Wide Association StudyAmericasCeliac DiseaseColitis, MicroscopicDermatitis HerpetiformisGenetic LociHumansPolymorphism, Single Nucleotide

Identifiers

PMID24999842
PMCPMC4084811
OpenAlexW2154605932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.