Evidence map›Paper›PMID 24998597›Full record

ArticleDevelopmental cell2014

Uniformity of nucleosome preservation pattern in Mammalian sperm and its connection to repetitive DNA elements.

Birgit Samans, Yang Yang, Stefan Krebs, Gaurav Vilas Sarode, Helmut Blum, Myriam Reichenbach, Eckhard Wolf, Klaus Steger, Temuujin Dansranjavin, Undraga Schagdarsurengin

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
22.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 159 citations in OpenAlex.

  1. Article
  2. Protamine lacunae preserve the paternal chromatin landscape in sperm.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Adverse Effects of Nicotine on Human Sperm Nuclear Proteins.The world journal of men's health · 2025
    Review
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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Birgit SamansResearch Centre for Biosystems, Land Use and Nutrition, IFZ, Justus Liebig University Giessen, 35392 Giessen, Germany.
Yang YangClinic and Polyclinic of Urology, Pediatric Urology and Andrology, Department of Molecular Andrology, Justus Liebig University Giessen, 35392 Giessen, Germany.
Stefan KrebsLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, Ludwig-Maximilians-University Munich, 81377 Munich, Germany.
Gaurav Vilas SarodeClinic and Polyclinic of Urology, Pediatric Urology and Andrology, Department of Molecular Andrology, Justus Liebig University Giessen, 35392 Giessen, Germany.
Helmut BlumLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, Ludwig-Maximilians-University Munich, 81377 Munich, Germany.
Myriam ReichenbachMolecular Animal Breeding and Biotechnology, Gene Center, Ludwig-Maximilians-University Munich, 81377 Munich, Germany.
Eckhard WolfLaboratory for Functional Genome Analysis (LAFUGA), Gene Center, Ludwig-Maximilians-University Munich, 81377 Munich, Germany; Molecular Animal Breeding and Biotechnology, Gene Center, Ludwig-Maximilians-University Munich, 81377 Munich, Germany.
Klaus StegerClinic and Polyclinic of Urology, Pediatric Urology and Andrology, Department of Molecular Andrology, Justus Liebig University Giessen, 35392 Giessen, Germany.
Temuujin DansranjavinClinic and Polyclinic of Urology, Pediatric Urology and Andrology, Department of Molecular Andrology, Justus Liebig University Giessen, 35392 Giessen, Germany.
Undraga SchagdarsurenginClinic and Polyclinic of Urology, Pediatric Urology and Andrology, Department of Molecular Andrology, Justus Liebig University Giessen, 35392 Giessen, Germany. Electronic address: undraga.schagdarsurengin@chiru.med.uni-giessen.de.
University of Giessen · DELudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleosome-to-protamine exchange during mammalian spermiogenesis is essential for compaction and protection of paternal DNA. It is interesting that, depending on the species, 1% to 15% of nucleosomes are retained, but the generalizability and biological function of this retention are unknown. Here, we show concordantly in human and bovine that nucleosomes remained in sperm chromatin predominantly within distal intergenic regions and introns and associated with centromere repeats and retrotransposons (LINE1 and SINEs). In contrast, nucleosome depletion concerned particularly exons, 5'-UTR, 3'-UTR, TSS, and TTS and was associated with simple and low-complexity repeats. Overlap of human and bovine genes exhibiting nucleosome preservation in the promoter and gene body revealed a significant enrichment of signal transduction and RNA- and protein-processing factors. Our study demonstrates the genome-wide uniformity of the nucleosome preservation pattern in mammalian sperm and its connection to repetitive DNA elements and suggests a function in preimplantation processes for paternally derived nucleosomes.

Indexed as

Gene Expression RegulationAnimalsCattleChromatin Assembly and DisassemblyDNAGenome, HumanHumansMaleNucleosomesPromoter Regions, GeneticRepetitive Sequences, Nucleic AcidSpermatozoaTranscription FactorsDNANucleosomesTranscription Factors

Identifiers

PMID24998597
OpenAlexW2051854412

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.