Evidence map›Paper›PMID 24997565›Full record

ArticleNature immunology2014

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility.

Grégory Seumois, Lukas Chavez, Anna Gerasimova, Matthias Lienhard, Nada Omran, Lukas Kalinke, Maria Vedanayagam, Asha Purnima V Ganesan, Ashu Chawla, Ratko Djukanović and 4 more

Abstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Epigenetic Echoes: Bridging Nature, Nurture, and Healing Across Generations.International journal of molecular sciences · 2025
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. A distal enhancer of GATA3 regulates Th2 differentiation and allergic inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Epigenetic regulation of pulmonary inflammation.Seminars in cell & developmental biology · 2024
    Review
  12. Review
  13. Article
  14. Article
  15. Early Prediction of Asthma.Journal of clinical medicine · 2023
    Review
  16. Article
  17. Article
  18. T helper 2 cells in asthma.The Journal of experimental medicine · 2023
    Review
  19. Article
  20. Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Grégory Seumois1] La Jolla Institute for Allergy & Immunology, La Jolla, California, USA. [2] Clinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK. [3] University of California San Francisco, San Francisco, California, USA. [4].
Lukas Chavez1] La Jolla Institute for Allergy & Immunology, La Jolla, California, USA. [2].
Anna Gerasimova1] La Jolla Institute for Allergy & Immunology, La Jolla, California, USA. [2].
Matthias LienhardLa Jolla Institute for Allergy & Immunology, La Jolla, California, USA.
Nada OmranClinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK.
Lukas KalinkeClinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK.
Maria VedanayagamClinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK.
Asha Purnima V GanesanClinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK.
Ashu ChawlaLa Jolla Institute for Allergy & Immunology, La Jolla, California, USA.
Ratko DjukanovićClinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK.
K Mark AnselUniversity of California San Francisco, San Francisco, California, USA.
Bjoern PetersLa Jolla Institute for Allergy & Immunology, La Jolla, California, USA.ORCID 0000000284576693
Anjana Rao1] La Jolla Institute for Allergy & Immunology, La Jolla, California, USA. [2] Sanford Consortium for Regenerative Medicine, La Jolla, California, USA. [3] Department of Pharmacology, University of California San Diego, San Diego, California, USA. [4] University of California San Diego Moores Cancer Center, San Diego, California, USA.
Pandurangan Vijayanand1] La Jolla Institute for Allergy & Immunology, La Jolla, California, USA. [2] Clinical and Experimental Sciences, Southampton National Institute for Health Research Respiratory Biomedical Research Unit, University of Southampton, Faculty of Medicine, Southampton, UK. [3] University of California San Francisco, San Francisco, California, USA.

Funding

SIGNAL TRANSDUCTION AND GENE INDUCTION IN T LYMPHOCYTESR01AI040127 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI HOGAN, PATRICK, RAO, ANJANA · 1996 to 2025
$13.3M
Epigenomics of T cells and innate immune cells in human asthmaR01HL114093 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2011 to 2020
$8.5M
Understanding mechanisms in specific immunotherapy (SIT)U19AI100275 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2012 to 2017
$8.1M
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NHLBI NIH HHS R01 HL114093NIAID NIH HHS R01 AI040127NIAID NIH HHS U19 AI100275Wellcome Trust
6 · The paper itself

Abstract

A characteristic feature of asthma is the aberrant accumulation, differentiation or function of memory CD4(+) T cells that produce type 2 cytokines (TH2 cells). By mapping genome-wide histone modification profiles for subsets of T cells isolated from peripheral blood of healthy and asthmatic individuals, we identified enhancers with known and potential roles in the normal differentiation of human TH1 cells and TH2 cells. We discovered disease-specific enhancers in T cells that differ between healthy and asthmatic individuals. Enhancers that gained the histone H3 Lys4 dimethyl (H3K4me2) mark during TH2 cell development showed the highest enrichment for asthma-associated single nucleotide polymorphisms (SNPs), which supported a pathogenic role for TH2 cells in asthma. In silico analysis of cell-specific enhancers revealed transcription factors, microRNAs and genes potentially linked to human TH2 cell differentiation. Our results establish the feasibility and utility of enhancer profiling in well-defined populations of specialized cell types involved in disease pathogenesis.

Indexed as

Genetic Predisposition to DiseaseAdolescentAdultAgedAsthmaBinding SitesCell DifferentiationCells, CulturedCore Binding Factor Alpha 3 SubunitDNA MethylationEpigenomicsFemaleGATA3 Transcription FactorGenome-Wide Association StudyHistonesHumansCore Binding Factor Alpha 3 SubunitGATA3 protein, humanGATA3 Transcription FactorHistonesMicroRNAsRunx3 protein, humanT-bet Transcription FactorT-Box Domain Proteins

Identifiers

PMID24997565
PMCPMC4140783

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.