ArticleDatabase : the journal of biological databases and curation2014
ChiloDB: a genomic and transcriptome database for an important rice insect pest Chilo suppressalis.
Article in Database : the journal of biological databases and curation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed.
- Optimizing mechanized cleaning of Corcyra cephalonica eggs for stored-product biocontrol via DEM parameter calibration and enhanced vibratory separation.Scientific reports · 2026Article
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- RNAi-Mediated Silencing of Putative Halloween Gene Phantom Affects the Performance of Rice Striped Stem Borer,Insects · 2022Article
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- Light environment drives evolution of color vision genes in butterflies and moths.Communications biology · 2021Article
- Full-length transcriptome analysis ofPeerJ · 2021Article
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- Fine-scale genetic structure of the overwintering Chilo suppressalis in the typical bivoltine areas of northern China.PloS one · 2020Article
- Characterization of an inducible HSP70 gene in Chilo suppressalis and expression in response to environmental and biological stress.Cell stress & chaperones · 2020Article
- CRISPR/Cas9-mediated PBP1 and PBP3 mutagenesis induced significant reduction in electrophysiological response to sex pheromones in male Chilo suppressalis.Insect science · 2019Article
- A Novel Aquaporin 12-like Protein fromGenes · 2019Article
- Transgenic microRNA-14 rice shows high resistance to rice stem borer.Plant biotechnology journal · 2019Article
- Identification and Functional Analysis of the First Aquaporin from Striped Stem Borer,Frontiers in physiology · 2018Article
- Characteristics and expression of genes encoding two small heat shock protein genes lacking introns from Chilo suppressalis.Cell stress & chaperones · 2018Article
- Multiple miRNAs jointly regulate the biosynthesis of ecdysteroid in the holometabolous insects,RNA (New York, N.Y.) · 2017Article
- Fast Detection of Striped Stem-Borer (Chilo suppressalis Walker) Infested Rice Seedling Based on Visible/Near-Infrared Hyperspectral Imaging System.Sensors (Basel, Switzerland) · 2017Article
- RNA-seq of Rice Yellow Stem BorerG3 (Bethesda, Md.) · 2017Article
- Knockdown of two Cadherin genes confers resistance to Cry2A and Cry1C in Chilo suppressalis.Scientific reports · 2017Article
- InsectBase: a resource for insect genomes and transcriptomes.Nucleic acids research · 2016Article
- Genome Sizes of Nine Insect Species Determined by Flow Cytometry andFrontiers in physiology · 2016Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
ChiloDB is an integrated resource that will be of use to the rice stem borer research community. The rice striped stem borer (SSB), Chilo suppressalis Walker, is a major rice pest that causes severe yield losses in most rice-producing countries. A draft genome of this insect is available. The aims of ChiloDB are (i) to store recently acquired genomic sequence and transcriptome data and integrate them with protein-coding genes, microRNAs, piwi-interacting RNAs (piRNAs) and RNA sequencing (RNA-Seq) data and (ii) to provide comprehensive search tools and downloadable data sets for comparative genomics and gene annotation of this important rice pest. ChiloDB contains the first version of the official SSB gene set, comprising 80,479 scaffolds and 10 221 annotated protein-coding genes. Additionally, 262 SSB microRNA genes predicted from a small RNA library, 82 639 piRNAs identified using the piRNApredictor software, 37,040 transcripts from a midgut transcriptome and 69 977 transcripts from a mixed sample have all been integrated into ChiloDB. ChiloDB was constructed using a data structure that is compatible with data resources, which will be incorporated into the database in the future. This resource will serve as a long-term and open-access database for research on the biology, evolution and pest control of SSB. To the best of our knowledge, ChiloDB is one of the first genomic and transcriptome database for rice insect pests. Database URL: http://ento.njau.edu.cn/ChiloDB.
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