Evidence map›Paper›PMID 24995530›Full record

ArticleMolecular microbiology2014

Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.

Matthew D Johnson, James Bell, Kim Clarke, Rachel Chandler, Prachi Pathak, Yandong Xia, Robert L Marshall, George M Weinstock, Nicholas J Loman, Peter J Winn and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Multitier regulation of theJournal of bacteriology · 2024
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  3. Review
  4. Creating Polyploid Escherichia Coli and Its Application in Efficient L-Threonine Production.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Gain-of-Function Mutations in Acid Stress Response (Antimicrobial agents and chemotherapy · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Matthew D JohnsonInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK; Drug Delivery, Disposition & Dynamics, Monash Institute of Pharmaceutical Sciences, 381 Royal Parade, Parkville, 3062, Vic., Australia.
James Bell
Kim Clarke
Rachel Chandler
Prachi Pathak
Yandong Xia
Robert L Marshall
George M Weinstock
Nicholas J Loman
Peter J Winn
Peter A Lund
University of Birmingham · GBUniversity of Liverpool · GBWashington University in St. Louis · US

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council MR/J014370/1
6 · The paper itself

Abstract

Laboratory-based evolution and whole-genome sequencing can link genotype and phenotype. We used evolution of acid resistance in exponential phase Escherichia coli to study resistance to a lethal stress. Iterative selection at pH 2.5 generated five populations that were resistant to low pH in early exponential phase. Genome sequencing revealed multiple mutations, but the only gene mutated in all strains was evgS, part of a two-component system that has already been implicated in acid resistance. All these mutations were in the cytoplasmic PAS domain of EvgS, and were shown to be solely responsible for the resistant phenotype, causing strong upregulation at neutral pH of genes normally induced by low pH. Resistance to pH 2.5 in these strains did not require the transporter GadC, or the sigma factor RpoS. We found that EvgS-dependent constitutive acid resistance to pH 2.5 was retained in the absence of the regulators GadE or YdeO, but was lost if the oxidoreductase YdeP was also absent. A deletion in the periplasmic domain of EvgS abolished the response to low pH, but not the activity of the constitutive mutants. On the basis of these results we propose a model for how EvgS may become activated by low pH.

Indexed as

Evolution, MolecularAcidsAmino Acid SequenceEscherichia coliEscherichia coli ProteinsHydrogen-Ion ConcentrationModels, MolecularMolecular Sequence DataMutationProtein KinasesProtein Structure, TertiaryAcidsEscherichia coli ProteinsEvgS protein, E coliProtein Kinases

Identifiers

PMID24995530
PMCPMC4283999
OpenAlexW2146588044

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.