Evidence map›Paper›PMID 24994900›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi.

Matthew B Lohse, Oren S Rosenberg, Jeffery S Cox, Robert M Stroud, Janet S Finer-Moore, Alexander D Johnson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Role of theToxins · 2025
    Article
  3. Article
  4. Role of theJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Profile of Alexander D. Johnson.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Matthew B LohseDepartments of Microbiology and Immunology and.
Oren S RosenbergDepartments of Microbiology and Immunology andDivision of Infectious Diseases, Department of Medicine, University of California, San Francisco, CA 94158.
Jeffery S CoxDepartments of Microbiology and Immunology and.
Robert M StroudBiochemistry and Biophysics and.
Janet S Finer-MooreBiochemistry and Biophysics and.
Alexander D JohnsonDepartments of Microbiology and Immunology andBiochemistry and Biophysics and ajohnson@cgl.ucsf.edu.

Funding

Regulatory Circuits and Virulence in Candida albicansR01AI049187 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2001 to 2021
$13.1M
TRNA METHYLASE AND TRNA PSEUDOURIDINE SYNTHASER01GM051232 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 1996 to 2012
$3.4M
Structural and functional studies of M. tuberculosis type VII secretionK08AI091656 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROSENBERG, OREN S · 2011 to 2014
$516k
NIAID NIH HHS K08 AI091656NIAID NIH HHS R01 AI049187NIAID NIH HHS R01AI049187NIGMS NIH HHS GM51232NIGMS NIH HHS R01 GM051232
6 · The paper itself

Abstract

WOPR-domain proteins are found throughout the fungal kingdom where they function as master regulators of cell morphology and pathogenesis. Genetic and biochemical experiments previously demonstrated that these proteins bind to specific DNA sequences and thereby regulate transcription. However, their primary sequence showed no relationship to any known DNA-binding domain, and the basis for their ability to recognize DNA sequences remained unknown. Here, we describe the 2.6-Å crystal structure of a WOPR domain in complex with its preferred DNA sequence. The structure reveals that two highly conserved regions, separated by an unconserved linker, form an interdigitated β-sheet that is tilted into the major groove of DNA. Although the main interaction surface is in the major groove, the highest-affinity interactions occur in the minor groove, primarily through a deeply penetrating arginine residue. The structure reveals a new, unanticipated mechanism by which proteins can recognize specific sequences of DNA.

Indexed as

Amino AcidsBase SequenceConserved SequenceCrystallography, X-RayDNA-Binding ProteinsDNA, FungalEvolution, MolecularFungal ProteinsFungiGene Expression Regulation, FungalModels, MolecularMolecular Sequence DataNucleic Acid ConformationPhylogenyProtein BindingProtein Structure, TertiaryAmino AcidsDNA-Binding ProteinsDNA, FungalFungal ProteinsSaccharomyces cerevisiae ProteinsTrans-ActivatorsCandida albicansfungal pathogenesisprotein–DNA interactiontranscriptional regulationtranscription factor

Identifiers

PMID24994900
PMCPMC4115540

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.