Evidence map›Paper›PMID 24994117›Full record

ArticleOncotarget2014

An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival.

Antoine M Snijders, Sasha Langley, Jian-Hua Mao, Sandhya Bhatnagar, Kathleen A Bjornstad, Chris J Rosen, Alvin Lo, Yurong Huang, Eleanor A Blakely, Gary H Karpen and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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  13. Type I interferons in anticancer immunity.Nature reviews. Immunology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Antoine M SnijdersLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Sasha LangleyLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Jian-Hua MaoLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Sandhya BhatnagarLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Kathleen A BjornstadLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Chris J RosenLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Alvin LoLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Yurong HuangLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Eleanor A BlakelyLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Gary H KarpenLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Mina J BissellLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Andrew J WyrobekLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA.
Lawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The concept that a breast cancer patient's menstrual stage at the time of tumor surgery influences risk of metastases remains controversial. The scarcity of comprehensive molecular studies of menstrual stage-dependent fluctuations in the breast provides little insight in this observation. To gain a deeper understanding of the biological changes in mammary tissue and blood during the menstrual cycle and to determine the influence of environmental exposures, such as low-dose ionizing radiation (LDIR), we used the mouse to characterize estrous-cycle variations in mammary gene transcripts by RNA-sequencing, peripheral white blood cell (WBC) counts and plasma cytokine levels. We identified an estrous-variable and hormone-dependent gene cluster enriched for Type-1 interferon genes. Cox regression identified a 117-gene signature of interferon-associated genes, which correlated with lower frequencies of metastasis in breast cancer patients. LDIR (10cGy) exposure had no detectable effect on mammary transcripts. However, peripheral WBC counts varied across the estrous cycle and LDIR exposure reduced lymphocyte counts and cytokine levels in tumor-susceptible mice. Our finding of variations in mammary Type-1 interferon and immune functions across the estrous cycle provides a mechanism by which timing of breast tumor surgery during the menstrual cycle may have clinical relevance to a patient's risk for distant metastases.

Indexed as

AnimalsDisease-Free SurvivalEstrous CycleFemaleHumansInterferonsMiceMice, Inbred BALB CMice, Inbred C57BLNeoplasm MetastasisRNA, MessengerInterferonsRNA, Messenger

Identifiers

PMID24994117
PMCPMC4147302
OpenAlexW1811444095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.