Evidence map›Paper›PMID 24992561›Full record

ArticlePLoS pathogens2014

Characterization of the largest effector gene cluster of Ustilago maydis.

Thomas Brefort, Shigeyuki Tanaka, Nina Neidig, Gunther Doehlemann, Volker Vincon, Regine Kahmann

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 111 citations in OpenAlex.

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  11. Systematic characterization ofFrontiers in microbiology · 2023
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  13. An Endoglucanase Secreted byJournal of fungi (Basel, Switzerland) · 2022
    Article
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  15. TheJournal of fungi (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Thomas BrefortMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Shigeyuki TanakaMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Nina NeidigMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Gunther DoehlemannMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Volker VinconMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Regine KahmannMax Planck Institute for Terrestrial Microbiology, Department of Organismic Interactions, Marburg, Germany.
Max Planck Society · DEMax Planck Institute for Terrestrial Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the genome of the biotrophic plant pathogen Ustilago maydis, many of the genes coding for secreted protein effectors modulating virulence are arranged in gene clusters. The vast majority of these genes encode novel proteins whose expression is coupled to plant colonization. The largest of these gene clusters, cluster 19A, encodes 24 secreted effectors. Deletion of the entire cluster results in severe attenuation of virulence. Here we present the functional analysis of this genomic region. We show that a 19A deletion mutant behaves like an endophyte, i.e. is still able to colonize plants and complete the infection cycle. However, tumors, the most conspicuous symptoms of maize smut disease, are only rarely formed and fungal biomass in infected tissue is significantly reduced. The generation and analysis of strains carrying sub-deletions identified several genes significantly contributing to tumor formation after seedling infection. Another of the effectors could be linked specifically to anthocyanin induction in the infected tissue. As the individual contributions of these genes to tumor formation were small, we studied the response of maize plants to the whole cluster mutant as well as to several individual mutants by array analysis. This revealed distinct plant responses, demonstrating that the respective effectors have discrete plant targets. We propose that the analysis of plant responses to effector mutant strains that lack a strong virulence phenotype may be a general way to visualize differences in effector function.

Indexed as

Gene DeletionGenes, FungalMultigene FamilyPlant TumorsSeedlingsUstilagoZea mays

Identifiers

PMID24992561
PMCPMC4081774
OpenAlexW1985508535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.