Evidence map›Paper›PMID 24990743›Full record

ArticleNature2014

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs.

Javier Lopez-Rios, Amandine Duchesne, Dario Speziale, Guillaume Andrey, Kevin A Peterson, Philipp Germann, Erkan Unal, Jing Liu, Sandrine Floriot, Sarah Barbey and 13 more

Open access · greenAbstract read
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In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 125 citations in OpenAlex.

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  5. Dual Bmp-negative feedback loops modulate function of both AER and ZPA to buffer and constrain postaxial digit number.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  13. Morphogens in the evolution of size, shape and patterning.Development (Cambridge, England) · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. Frem1 activity is regulated by Sonic hedgehog signaling in the cranial neural crest mesenchyme during midfacial morphogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 5 countries.

Javier Lopez-Rios1] Developmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland [2].
Amandine Duchesne1] Developmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland [2] Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, F-78350 Jouy-en-Josas, France [3].
Dario SpezialeDevelopmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland.
Guillaume AndreySchool of Life Sciences, Federal Institute of Technology Lausanne, CH-1015 Lausanne, Switzerland.
Kevin A PetersonDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, California 90089, USA.
Philipp GermannDepartment for Biosystems Science and Engineering, Federal Institute of Technology Zurich and Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Erkan Unal1] Developmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland [2] Department for Biosystems Science and Engineering, Federal Institute of Technology Zurich and Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Jing LiuDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, California 90089, USA.
Sandrine FloriotInstitut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, F-78350 Jouy-en-Josas, France.
Sarah BarbeyInstitut National de la Recherche Agronomique, Domaine Expérimental du Pin au Haras, F-61310 Exmes, France.
Yves GallardInstitut National de la Recherche Agronomique, Domaine Expérimental du Pin au Haras, F-61310 Exmes, France.
Magdalena Müller-GerblInstitute of Anatomy, Department Biomedicine, University of Basel, CH-4056 Basel, Switzerland.
Andrew D CourtneyInstitute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4072, Australia.
Christophe KloppInstitut National de la Recherche Agronomique, Biométrie et Intelligence Artificielle, F-31326 Castanet-Tolosan, France.
Sabrina Rodriguez1] Institut National de la Recherche Agronomique, Génétique Animale et Biologie Intégrative, F-78350 Jouy-en-Josas, France [2] Institut National de la Recherche Agronomique, Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés, F-31077 Toulouse, France.
Robert Ivanek1] Developmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland [2] Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Christian BeiselDepartment for Biosystems Science and Engineering, Federal Institute of Technology Zurich and Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Carol WickingInstitute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4072, Australia.
Dagmar IberDepartment for Biosystems Science and Engineering, Federal Institute of Technology Zurich and Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Benoit RobertInstitut Pasteur, Génétique Moléculaire de la Morphogenèse and Centre National de la Recherche Scientifique URA-2578, F-75015 Paris, France.
Andrew P McMahonDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, California 90089, USA.
Denis Duboule1] School of Life Sciences, Federal Institute of Technology Lausanne, CH-1015 Lausanne, Switzerland [2] Department of Genetics and Evolution, University of Geneva, CH-1211 Geneva, Switzerland.
Rolf ZellerDevelopmental Genetics, Department Biomedicine, University of Basel, CH-4058 Basel, Switzerland.
AgroParisTech · FRBroad Center · USThe University of Queensland · AUGénétique Moléculaire Génomique Microbiologie · FRSIB Swiss Institute of Bioinformatics · CH

Funding

Regulation of polarity by Sonic hedgehog morphogen signalingR01NS033642 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P. · 1995 to 2016
$5.7M
Regulation of CNS and Limb Polarity by Sonic HedgehogR37NS033642 · NINDS · HARVARD UNIVERSITY · PI MCMAHON, ANDREW P. · 2005 to 2011
$5.6M
NINDS NIH HHS NS 033642NINDS NIH HHS R01 NS033642
6 · The paper itself

Abstract

The large spectrum of limb morphologies reflects the wide evolutionary diversification of the basic pentadactyl pattern in tetrapods. In even-toed ungulates (artiodactyls, including cattle), limbs are adapted for running as a consequence of progressive reduction of their distal skeleton to symmetrical and elongated middle digits with hoofed phalanges. Here we analyse bovine embryos to establish that polarized gene expression is progressively lost during limb development in comparison to the mouse. Notably, the transcriptional upregulation of the Ptch1 gene, which encodes a Sonic hedgehog (SHH) receptor, is disrupted specifically in the bovine limb bud mesenchyme. This is due to evolutionary alteration of a Ptch1 cis-regulatory module, which no longer responds to graded SHH signalling during bovine handplate development. Our study provides a molecular explanation for the loss of digit asymmetry in bovine limb buds and suggests that modifications affecting the Ptch1 cis-regulatory landscape have contributed to evolutionary diversification of artiodactyl limbs.

Indexed as

Biological EvolutionAnimalsBody PatterningCattleExtremitiesFemaleGene Expression Regulation, DevelopmentalHedgehog ProteinsLimb BudsMaleMesodermMiceMice, TransgenicPatched-1 ReceptorPatched ReceptorsReceptors, Cell SurfaceHedgehog ProteinsPatched-1 ReceptorPatched ReceptorsPtch1 protein, mouseReceptors, Cell Surface

Identifiers

PMID24990743
OpenAlexW2048047242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.