ArticleMolecular plant pathology2015
Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq.
Article in Molecular plant pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed, 72 citations in OpenAlex.
- Characterization of Hibiscus Chlorotic Ringspot Virus-Derived vsiRNAs from Infected Hibiscus rosa-sinensis in China.The plant pathology journal · 2024Article
- Transcriptome profiling of pepper leaves by RNA-Seq during an incompatible and a compatible pepper-tobamovirus interaction.Scientific reports · 2021Article
- DecipheringMetabolites · 2021Review
- Transcriptome profiling reveals response genes for downy mildew resistance in cucumber.Planta · 2021Article
- Gene Expression Analysis of InducedInternational journal of molecular sciences · 2021Article
- QTL-seq analysis of powdery mildew resistance in a Korean cucumber inbred line.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Identification and verification of seed development related miRNAs in kernel almond by small RNA sequencing and qPCR.PloS one · 2021Article
- Characterization of Hibiscus Latent Fort Pierce Virus-Derived siRNAs in InfectedThe plant pathology journal · 2020Article
- Screening and functional characterization of candidate resistance genes to powdery mildew from Dasypyrum villosum#4 in a wheat line Pm97033.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Fine mapping and identification of candidate genes for the peach powdery mildew resistance gene Vr3.Horticulture research · 2020Article
- Transcriptomic and functional analyses reveal an antiviral role of autophagy during pepper mild mottle virus infection.BMC plant biology · 2020Article
- siRNAs Derived from Cymbidium Mosaic Virus and Odontoglossum Ringspot Virus Down-modulated the Expression Levels of Endogenous Genes inThe plant pathology journal · 2019Article
- Identification of phloem-associated translatome alterations during leaf development inHorticulture research · 2019Article
- Discovery of powdery mildew resistance gene candidates from Aegilops biuncialis chromosome 2Mb based on transcriptome sequencing.PloS one · 2019Article
- Molecular insights into Cassava brown streak virus susceptibility and resistance by profiling of the early host response.Molecular plant pathology · 2018Article
- Transcriptome reprogramming of resistant and susceptible peach genotypes during Xanthomonas arboricola pv. pruni early leaf infection.PloS one · 2018Article
- Transcriptional analysis and histochemistry reveal that hypersensitive cell death and HHorticulture research · 2018Article
- High throughput transcriptome analysis of coffee reveals prehaustorial resistance in response to Hemileia vastatrix infection.Plant molecular biology · 2017Article
- Transcriptomic changes in Nicotiana benthamiana plants inoculated with the wild-type or an attenuated mutant of Tobacco vein banding mosaic virus.Molecular plant pathology · 2017Article
- Development and comparative genomic mapping of Dasypyrum villosum 6V#4S-specific PCR markers using transcriptome data.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
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Authors and funding
7 authors at 4 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Differences in gene expression were studied after Plum pox virus (PPV, sharka disease) infection in peach GF305 leaves with and without sharka symptoms using RNA-Seq. For each sample, more than 80% of 100-nucleotide paired-end (PE) Illumina reads were aligned on the peach reference genome. In the symptomatic sample, a significant proportion of reads were mapped to PPV reference genomes (1.04% compared with 0.00002% in non-symptomatic leaves), allowing for the ultra-deep assembly of the complete genome of the PPV isolate used (9775 nucleotides, missing only 11 nucleotides at the 5' genome end). In addition, significant alternative splicing events were detected in 359 genes and 12 990 single nucleotide polymorphisms (SNPs) were identified, 425 of which could be annotated. Gene ontology annotation revealed that the high-ranking mRNA target genes associated with the expression of sharka symptoms are mainly related to the response to biotic stimuli, to lipid and carbohydrate metabolism and to the negative regulation of catalytic activity. A greater number of differentially expressed genes were observed in the early asymptomatic phase of PPV infection in comparison with the symptomatic phase. These early infection events were associated with the induction of genes related to pathogen resistance, such as jasmonic acid, chitinases, cytokinin glucosyl transferases and Lys-M proteins. Once the virus had accumulated, the overexpression of Dicer protein 2a genes suggested a gene silencing plant response that was suppressed by the virus HCPro and P1 proteins. These results illustrate the dynamic nature of the peach-PPV interaction at the transcriptome level and confirm that sharka symptom expression is a complex process that can be understood on the basis of changes in plant gene expression.
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