Evidence map›Paper›PMID 24987490›Full record

ArticleRice (New York, N.Y.)2014

Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format.

Yukichi Fujikawa, Takahiro Nakanishi, Hiroko Kawakami, Kanako Yamasaki, Masa H Sato, Hiroyuki Tsuji, Makoto Matsuoka, Naohiro Kato

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Split MutT prevents the mutator phenotype of mutT-deficient Escherichia coli.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Root angle modifications by theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yukichi FujikawaGraduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima 739-8528, Hiroshima, Japan.
Takahiro NakanishiGraduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima 739-8528, Hiroshima, Japan.
Hiroko KawakamiGraduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima 739-8528, Hiroshima, Japan.
Kanako YamasakiFaculty of Human Environmental Sciences, Kyoto Prefectural University, Kyoto 606-8522, Japan.
Masa H SatoFaculty of Human Environmental Sciences, Kyoto Prefectural University, Kyoto 606-8522, Japan.
Hiroyuki TsujiDepartment of Plant Biology, Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Nara, Japan.
Makoto MatsuokaBioscience and Biotechnology Center, Nagoya University, Nagoya Aichi 464-8601, Japan.
Naohiro KatoDepartment of Biological Sciences, Louisiana State University, 226 Life Sciences Building, Baton Rouge 70803, LA, USA.
Hiroshima University · JPKyoto Prefectural University · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe rice interactome, in which a network of protein-protein interactions has been elucidated in rice, is a useful resource to identify functional modules of rice signal transduction pathways. Protein-protein interactions occur in cells in two ways, constitutive and regulative. While a yeast-based high-throughput method has been widely used to identify the constitutive interactions, a method to detect the regulated interactions is rarely developed for a large-scale analysis.

resultsA split luciferase complementation assay was applied to detect the regulated interactions in rice. A transformation method of rice protoplasts in a 96-well plate was first established for a large-scale analysis. In addition, an antibody that specifically recognizes a carboxyl-terminal fragment of Renilla luciferase was newly developed. A pair of antibodies that recognize amino- and carboxyl- terminal fragments of Renilla luciferase, respectively, was then used to monitor quality and quantity of interacting recombinant-proteins accumulated in the cells. For a proof-of-concept, the method was applied to detect the gibberellin-dependent interaction between GIBBERELLIN INSENSITIVE DWARF1 and SLENDER RICE 1.

conclusionsA method to detect regulated protein-protein interactions was developed towards establishment of the rice interactome.

Indexed as

InteractomeRegulated protein-protein interactionsSplit luciferase complementation

Identifiers

PMID24987490
PMCPMC4077619
OpenAlexW2118659007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.