Evidence map›Paper›PMID 24986881›Full record

ArticleThe EMBO journal2014

Survival of mycobacteria depends on proteasome-mediated amino acid recycling under nutrient limitation.

Yifat Elharar, Ziv Roth, Inna Hermelin, Alexandra Moon, Gabriella Peretz, Yael Shenkerman, Marina Vishkautzan, Isam Khalaila, Eyal Gur

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 87 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Identification of a depupylation regulator for an essential enzyme inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Control of Toxin-Antitoxin Systems by Proteases inFrontiers in molecular biosciences · 2021
    Review
  13. Review
  14. Article
  15. Protein post-translational modifications in bacteria.Nature reviews. Microbiology · 2019
    Review
  16. TheProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yifat ElhararDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Ziv RothDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Inna HermelinDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Alexandra MoonDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Gabriella PeretzDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Yael ShenkermanDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Marina VishkautzanDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Isam KhalailaThe Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Eyal GurDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel gure@bgu.ac.il.
Ben-Gurion University of the Negev · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intracellular protein degradation is an essential process in all life domains. While in all eukaryotes regulated protein degradation involves ubiquitin tagging and the 26S-proteasome, bacterial prokaryotic ubiquitin-like protein (Pup) tagging and proteasomes are conserved only in species belonging to the phyla Actinobacteria and Nitrospira. In Mycobacterium tuberculosis, the Pup-proteasome system (PPS) is important for virulence, yet its physiological role in non-pathogenic species has remained an enigma. We now report, using Mycobacterium smegmatis as a model organism, that the PPS is essential for survival under starvation. Upon nitrogen limitation, PPS activity is induced, leading to accelerated tagging and degradation of many cytoplasmic proteins. We suggest a model in which the PPS functions to recycle amino acids under nitrogen starvation, thereby enabling the cell to maintain basal metabolic activities. We also find that the PPS auto-regulates its own activity via pupylation and degradation of its components in a manner that promotes the oscillatory expression of PPS components. As such, the destructive activity of the PPS is carefully balanced to maintain cellular functions during starvation.

Indexed as

Adenosine TriphosphateAmino AcidsBacterial ProteinsCarbonGene Expression Regulation, BacterialHomeostasisMutationMycobacterium smegmatisNitrogenOperonProteasome Endopeptidase ComplexProteolysisAdenosine TriphosphateAmino AcidsBacterial ProteinsCarbonNitrogenProteasome Endopeptidase Complexmycobacterianitrogen limitationproteasomeproteolysispupylation

Identifiers

PMID24986881
PMCPMC4195762
OpenAlexW2005890154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.