Evidence map›Paper›PMID 24986825›Full record

ArticleEuropean journal of human genetics : EJHG2015

Fine mapping analysis confirms and strengthens linkage of four chromosomal regions in familial hypospadias.

Cilla Söderhäll, Izabella Baranowska Körberg, Hanh T T Thai, Jia Cao, Yougen Chen, Xufeng Zhang, Zu Shulu, Loes F M van der Zanden, Iris A L M van Rooij, Louise Frisén and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Frontiers in pediatrics · 2022
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. The Genetic and Environmental Factors Underlying Hypospadias.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2015
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Cilla Söderhäll1] Department of Molecular Medicine and Surgery, Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden [2] Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Izabella Baranowska Körberg1] Department of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden [2] Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden.
Hanh T T ThaiDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Jia CaoDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Yougen ChenDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Xufeng ZhangDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Zu ShuluDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Loes F M van der ZandenDepartment for Health Evidence, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Iris A L M van RooijDepartment for Health Evidence, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Louise FrisénDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.
Nel Roeleveld1] Department for Health Evidence, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands [2] Department of Pediatrics, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Ellen MarkljungDepartment of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden.
Ingrid KockumDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.
Agneta Nordenskjöld1] Department of Women's and Children's Health, Center for Molecular Medicine, Karolinska Institutet CMM 02, Karolinska University Hospital, Stockholm, Sweden [2] Department of Pediatric Surgery, Astrid Lindgren Children Hospital, Karolinska University Hospital, Stockholm, Sweden.
Karolinska Institutet · SEKarolinska University Hospital · SERadboud University Medical Center · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypospadias is a common male genital malformation and is regarded as a complex disease affected by multiple genetic as well as environmental factors. In a previous genome-wide scan for familial hypospadias, we reported suggestive linkage in nine chromosomal regions. We have extended this analysis by including new families and additional markers using non-parametric linkage. The fine mapping analysis displayed an increased LOD score on chromosome 8q24.1 and 10p15 in altogether 82 families. On chromosome 10p15, with the highest LOD score, we further studied AKR1C2, AKR1C3 and AKR1C4 involved in steroid metabolism, as well as KLF6 expressed in preputial tissue from hypospadias patients. Mutation analysis of the AKR1C3 gene showed a new mutation, c.643G>A (p.(Ala215Thr)), in a boy with penile hypospadias. This mutation is predicted to have an impact on protein function and structure and was not found in controls. Altogether, we homed in on four chromosomal regions likely to harbor genes for hypospadias. Future studies will aim for studying regulatory sequence variants in these regions.

Indexed as

Chromosome MappingLod Score3-alpha-Hydroxysteroid Dehydrogenase (B-Specific)3-Hydroxysteroid DehydrogenasesAldo-Keto Reductase Family 1 Member C3Asian PeopleCase-Control StudiesChromosomes, Human, Pair 10Chromosomes, Human, Pair 8ExonsGene Expression RegulationGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeGenotyping Techniques3-alpha-Hydroxysteroid Dehydrogenase (B-Specific)3-Hydroxysteroid DehydrogenasesAKR1C2 protein, humanAKR1C3 protein, humanAldo-Keto Reductase Family 1 Member C3Hydroxyprostaglandin DehydrogenasesHydroxysteroid DehydrogenasesKLF6 protein, humanKruppel-Like Factor 6Kruppel-Like Transcription FactorsOxidoreductasesProto-Oncogene Proteinstrans-1,2-dihydrobenzene-1,2-diol dehydrogenase

Identifiers

PMID24986825
PMCPMC4666571
OpenAlexW2002793115

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.