Evidence map›Paper›PMID 24982914›Full record

ArticleBioMed research international2014

A large French case-control study emphasizes the role of rare Mc1R variants in melanoma risk.

Hui-Han Hu, Mériem Benfodda, Nicolas Dumaz, Steven Gazal, Vincent Descamps, Agnès Bourillon, Nicole Basset-Seguin, Angélique Riffault, Khaled Ezzedine, Martine Bagot and 4 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Hui-Han HuINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Laboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Mériem BenfoddaLaboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Nicolas DumazINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France.
Steven GazalUMR S738, Faculté de Médecine Xavier Bichat, 16 rue Henri Huchard, 75018 Paris, France.ORCID 0000-0001-5714-7597
Vincent DescampsINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Service de Dermatologie, Hôpital Bichat Claude Bernard, APHP, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Agnès BourillonLaboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Nicole Basset-SeguinINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Service de Dermatologie, Hôpital Saint Louis, APHP, Université Paris 7, 1 Avenue Claude Vellefaux, 75010 Paris, France.
Angélique RiffaultLaboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Khaled EzzedineService de Dermatologie, CHU Bordeaux, Université V Segalen Bordeaux 2, 12 rue Dubernat 33404 Bordeaux, France ; INSERM U876, 146 rue Leo Saignat, 33076 Bordeaux, France.
Martine BagotINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Service de Dermatologie, Hôpital Saint Louis, APHP, Université Paris 7, 1 Avenue Claude Vellefaux, 75010 Paris, France.
Armand BensussanINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Service de Dermatologie, Hôpital Saint Louis, APHP, Université Paris 7, 1 Avenue Claude Vellefaux, 75010 Paris, France.ORCID 0000-0002-0409-2497
Philippe SaiagService de Dermatologie, Hôpital Ambroise Paré, APHP, 9 Avenue Charles-de-Gaulle, 92100 Boulogne Billancourt, France ; Université Saint Quentin en Yvelines, 55 Avenue de Paris, 78000 Versailles, France.
Bernard GrandchampLaboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Nadem SoufirINSERM U976, Centre de Recherche sur la Peau, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France ; Laboratoire de Génétique, Hôpital Bichat Claude Bernard, APHP, IFR02, Université Paris 7, 46 rue Henri Hucahrd, 75018 Paris, France.
Université Claude Bernard Lyon 1 · FRInserm · FRHôpital Xavier Arnozan · FRUniversité de Versailles Saint-Quentin-en-Yvelines · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe MC1R gene implicated in melanogenesis and skin pigmentation is highly polymorphic. Several alleles are associated with red hair and fair skin phenotypes and contribute to melanoma risk.

objectiveThis work aims to assess the effect of different classes of MC1R variants, notably rare variants, on melanoma risk. Methods. MC1R coding region was sequenced in 1131 melanoma patients and 869 healthy controls. MC1R variants were classified as RHC (R) and non-RHC (r). Rare variants (frequency < 1%) were subdivided into two subgroups, predicted to be damaging (D) or not (nD).

resultsBoth R and r alleles were associated with melanoma (OR = 2.66 [2.20-3.23] and 1.51 [1.32-1.73]) and had similar population attributable risks (15.8% and 16.6%). We also identified 69 rare variants, of which 25 were novel. D variants were strongly associated with melanoma (OR = 2.38 [1.38-4.15]) and clustered in the same MC1R domains as R alleles (intracellular 2, transmembrane 2 and 7).

conclusionThis work confirms the role of R and r alleles in melanoma risk in the French population and proposes a novel class of rare D variants as important melanoma risk factors. These findings may improve the definition of high-risk subjects that could be targeted for melanoma prevention and screening.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesFranceHumansMelanomaMultivariate AnalysisPolymorphism, Single NucleotideProtein Structure, TertiaryReceptor, Melanocortin, Type 1Risk FactorsSkin NeoplasmsReceptor, Melanocortin, Type 1

Identifiers

PMID24982914
PMCPMC4003837
OpenAlexW2110574705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.