Evidence map›Paper›PMID 24982892›Full record

ArticleBioMed research international2014

Computational analysis of mRNA expression profiles identifies the ITG family and PIK3R3 as crucial genes for regulating triple negative breast cancer cell migration.

Sukhontip Klahan, Mei-Shin Wu, Edward Hsi, Chi-Cheng Huang, Ming-Feng Hou, Wei-Chiao Chang

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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  9. miR-152 functions as a tumor suppressor in colorectal cancer by targeting PIK3R3.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  10. MiR-511 inhibits growth and metastasis of human hepatocellular carcinoma cells by targeting PIK3R3.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Sukhontip KlahanDepartment of Clinical Pharmacy, Taipei Medical University, Taipei 110, Taiwan.ORCID 0000-0001-9823-0733
Mei-Shin WuDepartment of Clinical Pharmacy, Taipei Medical University, Taipei 110, Taiwan.ORCID 0000-0001-6544-1163
Edward HsiDepartment of Medical Research, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan.ORCID 0000-0002-8272-6707
Chi-Cheng HuangGraduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei 106, Taiwan ; Cathay General Hospital SiJhih, New Taipei 221, Taiwan ; School of Medicine, Fu-Jen Catholic University, New Taipei 242, Taiwan ; School of Medicine, Taipei Medical University, Taipei 110, Taiwan.ORCID 0000-0003-4378-4776
Ming-Feng HouCancer Center, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan ; Department of Surgery, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan ; Kaohsiung Municipal Ta-Tung Hospital, Kaohsiung 801, Taiwan.
Wei-Chiao ChangDepartment of Clinical Pharmacy, Taipei Medical University, Taipei 110, Taiwan ; Cancer Center, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan ; Department of Pharmacy, Taipei Medical University-Wan Fang Hospital, Taipei 116, Taiwan ; Master Program for Clinical Pharmacogenomics and Pharmacoproteomics, School of Pharmacy, Taipei Medical University, Taipei 110, Taiwan.
Kaohsiung Medical University · TWTaipei Medical University · TWFu Jen Catholic University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is an aggressive type of breast cancer that does not express estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor (Her2/neu). TNBC has worse clinical outcomes than other breast cancer subtypes. However, the key molecules and mechanisms of TNBC migration remain unclear. In this study, we compared two normalized microarray datasets from GEO database between Asian (GSE33926) and non-Asian populations (GSE46581) to determine the molecules and common pathways in TNBC migration. We demonstrated that 16 genes in non-Asian samples and 9 genes in Asian samples are related to TNBC migration. In addition, our analytic results showed that 4 genes, PIK3R3, ITGB1, ITGAL, and ITGA6, were involved in the regulation of actin cytoskeleton. Our results indicated potential genes that link to TNBC migration. This study may help identify novel therapeutic targets for drug development in cancer therapy.

Indexed as

Gene Expression ProfilingAdultAsian PeopleCell MovementComputational BiologyData MiningDemographyFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansIntegrinsMiddle AgedPhosphatidylinositol 3-KinasesRNA, MessengerSignal TransductionIntegrinsPhosphatidylinositol 3-KinasesPIK3R3 protein, humanRNA, Messenger

Identifiers

PMID24982892
PMCPMC4032728
OpenAlexW1985236649

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.