ArticleBioMed research international2014
Gleditsia sinensis: transcriptome sequencing, construction, and application of its protein-protein interaction network.
Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 11 citations in OpenAlex.
- Trade-off between yield and quality driven by artificial domestication inFrontiers in plant science · 2026Article
- The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis.Plant communications · 2024Article
- Full-length transcriptome characterization and comparative analysis of Gleditsia sinensis.BMC genomics · 2023Article
- Insights into molecular structure, genome evolution and phylogenetic implication through mitochondrial genome sequence of Gleditsia sinensis.Scientific reports · 2021Article
- Identification of genes underlying phenotypic plasticity of wing size via insulin signaling pathway by network-based analysis in Sogatella furcifera.BMC genomics · 2019Article
- Identification of potential genes involved in triterpenoid saponins biosynthesis in Gleditsia sinensis by transcriptome and metabolome analyses.Journal of natural medicines · 2019Article
- Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant World.Proteomes · 2018Article
- Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert.Scientific reports · 2017Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Gleditsia sinensis is a genus of deciduous tree in the family Caesalpinioideae, native to China, and is of great economic importance. However, despite its economic value, gene sequence information is strongly lacking. In the present study, transcriptome sequencing of G. sinensis was performed resulting in approximately 75.5 million clean reads assembled into 142155 unique transcripts generating 58583 unigenes. The average length of the unigenes was 900 bp, with an N50 of 549 bp. The obtained unigene sequences were then compared to four protein databases to include NCBI nonredundant protein (NRDB), Swiss-prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), and the Cluster of Orthologous Groups (COG). Using BLAST procedure, 31385 unigenes (53.6%) were generated to have functional annotations. Additionally, sequence homologies between identified unigenes and genes of known species in a protein-protein interaction (PPI) network facilitated G. sinensis PPI network construction. Based on this network construction, new stress resistance genes (including cold, drought, and high salinity) were predicted. The present study is the first investigation of genome-wide gene expression in G. sinensis with the results providing a basis for future functional genomic studies relating to this species.
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