ArticleFrontiers in plant science2014
Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana.
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 24 citations in OpenAlex.
- Integrated Gene Regulatory Network Analysis Reveals Coordinated Transcriptional Reprogramming in thePlants (Basel, Switzerland) · 2026Article
- Advancements in photosynthetic efficiency: Pathways, regulation, and biotechnological applications for enhancing crop productivity.Plant signaling & behavior · 2025Review
- Photosynthesis: Genetic Strategies Adopted to Gain Higher Efficiency.International journal of molecular sciences · 2024Review
- Harnessing tissue-specific genome editing in plants through CRISPR/Cas system: current state and future prospects.Planta · 2021Review
- A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data.Briefings in bioinformatics · 2021Review
- Photosynthesis research: a model to bridge fundamental science, translational products, and socio-economic considerations in agriculture.Journal of experimental botany · 2020Review
- Converging phenomics and genomics to study natural variation in plant photosynthetic efficiency.The Plant journal : for cell and molecular biology · 2019Review
- Regulation of the Calvin-Benson-Bassham cycle in the enigmatic diatoms: biochemical and evolutionary variations on an original theme.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017Review
- CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.BMC bioinformatics · 2016Article
- Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis.BMC genomics · 2016Article
- A Novel R2R3-MYB Transcription Factor BpMYB106 of Birch (Betula platyphylla) Confers Increased Photosynthesis and Growth Rate through Up-regulating Photosynthetic Gene Expression.Frontiers in plant science · 2016Article
- Integrated network analysis and effective tools in plant systems biology.Frontiers in plant science · 2014Review
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Photosynthesis is one of the most important biological processes on the earth. So far, though the molecular mechanisms underlying photosynthesis is well understood, however, the regulatory networks of photosynthesis are poorly studied. Given the current interest in improving photosynthetic efficiency for greater crop yield, elucidating the detailed regulatory networks controlling the construction and maintenance of photosynthetic machinery is not only scientifically significant but also holding great potential in agricultural application. In this study, we first identified transcription factors (TFs) related to photosynthesis through the TRAP approach using position weight matrix information. Then, for TFs related to photosynthesis, interactions between them and their targets were also determined by the ARACNE approach. Finally, a gene regulatory network was established by combining TF-targets information generated by these two approaches. Topological analysis of the regulatory network suggested that (a) the regulatory network of photosynthesis has a property of "small world"; (b) there is substantial coordination mediated by transcription factors between different components in photosynthesis.
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