Evidence map›Paper›PMID 24982148›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity.

Michael A Funk, Evan T Judd, E Neil G Marsh, Sean J Elliott, Catherine L Drennan

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 64 citations in OpenAlex.

  1. The structural basis of malodorant skatole formation by the glycyl radical enzyme indoleacetate decarboxylase.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  4. Review
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  9. Structural basis for anaerobic alkane activation by a multisubunit glycyl radical enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  10. Article
  11. Article
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  13. Development of aniScience · 2023
    Article
  14. Article
  15. Parameter Reliability and Understanding Enzyme Function.Molecules (Basel, Switzerland) · 2022
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Michael A FunkDepartment of Chemistry.
Evan T JuddDepartment of Chemistry, Boston University, Boston, MA 02215; and.
E Neil G MarshDepartments of Chemistry and Biological Chemistry, University of Michigan, Ann Arbor, MI 48109.
Sean J ElliottDepartment of Chemistry, Boston University, Boston, MA 02215; and.
Catherine L DrennanDepartment of Chemistry,Department of Biology, andHoward Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139; cdrennan@mit.edu.
Boston University · USHoward Hughes Medical Institute · USUniversity of Michigan–Ann Arbor · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Understanding hydrogen atom transfer reactions in enzymesR01GM093088 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARSH, E NEIL · 2010 to 2023
$3.5M
Probing the mechanism and diversity of multi-electron redox reactions in sulfiteF31GM099416 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI JUDD, EVAN THOMAS · 2011 to 2014
$153k
Howard Hughes Medical InstituteNIGMS NIH HHS F31 GM099416NIGMS NIH HHS GM093088NIGMS NIH HHS GM099416NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM093088
6 · The paper itself

Abstract

Anaerobic degradation of the environmental pollutant toluene is initiated by the glycyl radical enzyme benzylsuccinate synthase (BSS), which catalyzes the radical addition of toluene to fumarate, forming benzylsuccinate. We have determined crystal structures of the catalytic α-subunit of BSS with its accessory subunits β and γ, which both bind a [4Fe-4S] cluster and are essential for BSS activity in vivo. We find that BSSα has the common glycyl radical enzyme fold, a 10-stranded β/α-barrel that surrounds the glycyl radical cofactor and active site. Both accessory subunits β and γ display folds related to high potential iron-sulfur proteins but differ substantially from each other in how they interact with the α-subunit. BSSγ binds distally to the active site, burying a hydrophobic region of BSSα, whereas BSSβ binds to a hydrophilic surface of BSSα that is proximal to the active site. To further investigate the function of BSSβ, we determined the structure of a BSSαγ complex. Remarkably, we find that the barrel partially opens, allowing the C-terminal region of BSSα that houses the glycyl radical to shift within the barrel toward an exit pathway. The structural changes that we observe in the BSSαγ complex center around the crucial glycyl radical domain, thus suggesting a role for BSSβ in modulating the conformational dynamics required for enzyme activity. Accompanying proteolysis experiments support these structural observations.

Indexed as

Bacterial ProteinsCarbon-Carbon LyasesCatalytic DomainCrystallography, X-RayEnzyme ActivationFree RadicalsGlycineIron-Sulfur ProteinsProtein Structure, SecondaryStructure-Activity RelationshipThaueraBacterial Proteinsbenzylsuccinate synthaseCarbon-Carbon LyasesFree RadicalsGlycineIron-Sulfur Proteinsbioremediationcrystallographyiron–sulfur clustermicrobial metabolismradical chemistry

Identifiers

PMID24982148
PMCPMC4104874
OpenAlexW1966587522

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.