Evidence map›Paper›PMID 24981669›Full record

ArticleBMC microbiology2014

Characterization of bacteriophage communities and CRISPR profiles from dental plaque.

Mayuri Naidu, Refugio Robles-Sikisaka, Shira R Abeles, Tobias K Boehm, David T Pride

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 63 citations in OpenAlex.

  1. Oral virome in health and disease.Journal of the American Dental Association (1939) · 2026
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Role of Virus on Oral Biofilm: Inducer or Eradicator?Applied biochemistry and biotechnology · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Mucosal Environment Induces Phage Susceptibility inPHAGE (New Rochelle, N.Y.) · 2022
    Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Natural Occurrence ofFrontiers in microbiology · 2019
    Article
  20. Journal of oral microbiology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mayuri Naidu
Refugio Robles-Sikisaka
Shira R Abeles
Tobias K Boehm
David T PrideDepartment of Pathology, University of California, San Diego, CA, USA. dpride@ucsd.edu.
University of California, San Diego · USWestern University of Health Sciences · US

Funding

Microbiome analysis of human oral bacteriophage communitiesK08AI085028 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PRIDE, DAVID TEVIS · 2011 to 2013
$398k
NIAID NIH HHS 1K08AI085028
6 · The paper itself

Abstract

backgroundDental plaque is home to a diverse and complex community of bacteria, but has generally been believed to be inhabited by relatively few viruses. We sampled the saliva and dental plaque from 4 healthy human subjects to determine whether plaque was populated by viral communities, and whether there were differences in viral communities specific to subject or sample type.

resultsWe found that the plaque was inhabited by a community of bacteriophage whose membership was mostly subject-specific. There was a significant proportion of viral homologues shared between plaque and salivary viromes within each subject, suggesting that some oral viruses were present in both sites. We also characterized Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in oral streptococci, as their profiles provide clues to the viruses that oral bacteria may be able to counteract. While there were some CRISPR spacers specific to each sample type, many more were shared across sites and were highly subject specific. Many CRISPR spacers matched viruses present in plaque, suggesting that the evolution of CRISPR loci may have been specific to plaque-derived viruses.

conclusionsOur findings of subject specificity to both plaque-derived viruses and CRISPR profiles suggest that human viral ecology may be highly personalized.

Indexed as

BiodiversityClustered Regularly Interspaced Short Palindromic RepeatsBacteriophagesDental PlaqueHumansSalivaStreptococcus

Identifiers

PMID24981669
PMCPMC4104742
OpenAlexW1965915254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.