Evidence map›Paper›PMID 24980796›Full record

ArticleStructure (London, England : 1993)2014

State-dependent network connectivity determines gating in a K+ channel.

Murali K Bollepalli, Philip W Fowler, Markus Rapedius, Lijun Shang, Mark S P Sansom, Stephen J Tucker, Thomas Baukrowitz

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Murali K BollepalliPhysiological Institute, Christian-Albrechts University, 24118 Kiel, Germany.
Philip W FowlerDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Markus RapediusPhysiological Institute, Christian-Albrechts University, 24118 Kiel, Germany.
Lijun ShangClarendon Laboratory, Department of Physics, University of Oxford Oxford, OX1 3PU, UK.
Mark S P SansomDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; OXION Ion Channel Initiative, University of Oxford, Oxford OX1 3PT, UK.
Stephen J TuckerClarendon Laboratory, Department of Physics, University of Oxford Oxford, OX1 3PU, UK; OXION Ion Channel Initiative, University of Oxford, Oxford OX1 3PT, UK. Electronic address: stephen.tucker@physics.ox.ac.uk.
Thomas BaukrowitzPhysiological Institute, Christian-Albrechts University, 24118 Kiel, Germany. Electronic address: t.baukrowitz@physiologie.uni-kiel.de.

Funding

Biotechnology and Biological Sciences Research Council B19456Biotechnology and Biological Sciences Research Council BB/H000267/1Biotechnology and Biological Sciences Research Council BB/I019855/1Biotechnology and Biological Sciences Research Council BB/L002558/1Biotechnology and Biological Sciences Research Council BBS/B/16011Biotechnology and Biological Sciences Research Council BEP17032British Heart Foundation PG/09/016/26992Wellcome Trust
6 · The paper itself

Abstract

X-ray crystallography has provided tremendous insight into the different structural states of membrane proteins and, in particular, of ion channels. However, the molecular forces that determine the thermodynamic stability of a particular state are poorly understood. Here we analyze the different X-ray structures of an inwardly rectifying potassium channel (Kir1.1) in relation to functional data we obtained for over 190 mutants in Kir1.1. This mutagenic perturbation analysis uncovered an extensive, state-dependent network of physically interacting residues that stabilizes the pre-open and open states of the channel, but fragments upon channel closure. We demonstrate that this gating network is an important structural determinant of the thermodynamic stability of these different gating states and determines the impact of individual mutations on channel function. These results have important implications for our understanding of not only K+ channel gating but also the more general nature of conformational transitions that occur in other allosteric proteins.

Indexed as

MutationProtein ConformationAnimalsCrystallography, X-RayFemaleHydrogen-Ion ConcentrationIon Channel GatingModels, MolecularOocytesPatch-Clamp TechniquesPotassium Channels, Inwardly RectifyingProtein SubunitsRatsThermodynamicsXenopusKcnj1 protein, ratPotassium Channels, Inwardly RectifyingProtein Subunits

Identifiers

PMID24980796
PMCPMC4087272

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.